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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

Summary[edit | edit source]

  • pan ID?: SAUPAN001769000
  • symbol?:
  • synonym:
  • description?: phi-like protein

      descriptions from strain specific annotations:

    • phi-like protein
    • VRR-NUC domain-containing protein
    • phi phage protein
    • phi related protein
    • VRR-NUC
  • strand?: -
  • coordinates?: 2194938..2195251
  • synteny block?: BlockID0011680
  • occurrence?: in 42% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0344
    11819-97:
    MS7_1473
    6850:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    SAEMRSA15_13790
    JH1:
    SaurJH1_1074
    JH9:
    SaurJH9_1054
    JKD6008:
    JKD6159:
    SAA6159_01383
    LGA251:
    M013:
    MRSA252:
    SAR1524
    MSHR1132:
    MSSA476:
    SAS0927
    Mu3:
    Mu50:
    MW2:
    MW1406
    RF122:
    ST398:
    SAPIG0368
    T0131:
    TCH60:
    HMPREF0772_11685
    TW20:
    USA300_TCH1516:
    USA300HOU_1457
    VC40:

Genome Viewer[edit | edit source]

NCTC8325
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    NCTC8325        MKESTLEKYLVKEITKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGKLHPLQ
    USA300_FPR3757  MKESTLEKYLVKEISKLNGLCLKWVAPGTRGVPDRIIIMPEGKTYFVEMKQEKGKLHPLQ
                    **************:*********************************************

    NCTC8325        KYVHRQFENRDHKVYVLWNKEQVNTFIRMVGGTFGD
    USA300_FPR3757  KYVHRQFENRDHKVYVLWNKEQVNTFIRMVGGTFGD
                    ************************************