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⊟Summary[edit | edit source]
- pan ID?: SAUPAN001909000
- symbol?: ychF
- synonym:
- description?: GTP-dependent nucleic acid-binding protein EngD
- GTP-dependent nucleic acid-binding protein EngD
- GTP-binding protein YchF
- GTP-binding protein, putative
- redox-regulated ATPase YchF
- GTP-binding and nucleic acid-binding protein YchF
- putative GTP-binding protein
- ychF, translation-associated GTPase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2396278..2397375
- synteny block?: BlockID0012820
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0361 (ychF)
08BA02176:
C248_0420 (ychF)
11819-97:
MS7_0353 (ychF)
6850:
RSAU_000308 (ychF)
71193:
ST398NM01_0443
ECT-R 2:
ECTR2_324
ED133:
SAOV_0387
ED98:
SAAV_0331
HO 5096 0412:
SAEMRSA15_03180
JH1:
SaurJH1_0422 (ychF)
JH9:
SaurJH9_0411 (ychF)
JKD6008:
SAA6008_00340 (ychF)
JKD6159:
SAA6159_00337 (ychF)
LGA251:
SARLGA251_03250
M013:
M013TW_0341
MRSA252:
SAR0360 (ychF)
MSHR1132:
SAMSHR1132_03360
MSSA476:
SAS0339 (ychF)
Mu3:
SAHV_0360
Mu50:
SAV0363 (ychF)
MW2:
MW0339 (ychF)
RF122:
SAB0314 (ychF)
ST398:
SAPIG0443 (ychF)
T0131:
SAT0131_00371 (dnaB)
TCH60:
HMPREF0772_10132 (ychF)
TW20:
SATW20_04310
USA300_TCH1516:
USA300HOU_0384
VC40:
SAVC_01565
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MALTAGIVGLPNVGKSTLFNAITKAGALAANYPFATIDPNVGIVEVPDARLLKLEEMVQP
N315 MALTAGIVGLPNVGKSTLFNAITKAGALAANYPFATIDPNVGIVEVPDARLLKLEEMVQP
NCTC8325 MALTAGIVGLPNVGKSTLFNAITKAGALAANYPFATIDPNVGIVEVPDARLLKLEEMVQP
Newman MALTAGIVGLPNVGKSTLFNAITKAGALAANYPFATIDPNVGIVEVPDARLLKLEEMVQP
USA300_FPR3757 MALTAGIVGLPNVGKSTLFNAITKAGALAANYPFATIDPNVGIVEVPDARLLKLEEMVQP
************************************************************
COL KKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVAGRVD
N315 KKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVAGRVD
NCTC8325 KKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVAGRVD
Newman KKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVAGRVD
USA300_FPR3757 KKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVAGRVD
************************************************************
COL PIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEMEVRILTTIKEALENGKPARS
N315 PIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEMEVRILTTIKEALENGKPARS
NCTC8325 PIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEMEVRILTTIKEALENGKPARS
Newman PIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEMEVRILTTIKEALENGKPARS
USA300_FPR3757 PIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEMEVRILTTIKEALENGKPARS
************************************************************
COL IDFNEEDQKWVNQAQLLTSKKMLYIANVGEDEIGDDDNDKVKAIREYAAQEDSEVIVISA
N315 IDFNEEDQKWVNQAQLLTSKKMLYIANVGEDEIGDDDNDKVKAIREYAAQEDSEVIVISA
NCTC8325 IDFNEEDQKWVNQAQLLTSKKMLYIANVGEDEIGDDDNDKVKAIREYAAQEDSEVIVISA
Newman IDFNEEDQKWVNQAQLLTSKKMLYIANVGEDEIGDDDNDKVKAIREYAAQEDSEVIVISA
USA300_FPR3757 IDFNEEDQKWVNQAQLLTSKKMLYIANVGEDEIGDDDNDKVKAIREYAAQEDSEVIVISA
************************************************************
COL KIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRAWTFKQG
N315 KIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRAWTFKQG
NCTC8325 KIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRAWTFKQG
Newman KIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRAWTFKQG
USA300_FPR3757 KIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRAWTFKQG
************************************************************
COL MTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGGESGAKEAGRQRLEGKEYIMQDGDIVH
N315 MTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGGESGAKEAGRQRLEGKEYIMQDGDIVH
NCTC8325 MTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGGESGAKEAGRQRLEGKEYIMQDGDIVH
Newman MTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGGESGAKEAGRQRLEGKEYIMQDGDIVH
USA300_FPR3757 MTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGGESGAKEAGRQRLEGKEYIMQDGDIVH
************************************************************
COL FRFNV
N315 FRFNV
NCTC8325 FRFNV
Newman FRFNV
USA300_FPR3757 FRFNV
*****