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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002118000
- symbol?: ssl9
- synonym:
- description?: staphylococcal superantigen-like protein 9
- staphylococcal superantigen-like protein 9
- superantigen-like protein
- superantigen-like protein SSL9
- enterotoxin-like toxin
- Exotoxin 13
- exotoxin 5
- staphylococcal/Streptococcal toxin, beta-grasp domain protein
- Staphylococcal enterotoxin-like toxin
- staphylococcal exotoxin
- superantigen-like protein, exotoxin 13
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2609474..2610401
- synteny block?: BlockID0014240
- occurrence?: in 94% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0404 (set13)
08BA02176:
C248_0480 (set5)
11819-97:
MS7_0404
6850:
RSAU_000358
71193:
ST398NM01_0497
ECT-R 2:
ECTR2_364
ED133:
SAOV_0449
ED98:
SAAV_0372
HO 5096 0412:
SAEMRSA15_03590 (set5)
JH1:
SaurJH1_0464
JH9:
SaurJH9_0452
JKD6008:
SAA6008_00432 (set13)
JKD6159:
—
LGA251:
SARLGA251_03670 (set5)
M013:
M013TW_0390
MRSA252:
SAR0429 (set5)
MSHR1132:
—
MSSA476:
SAS0392
Mu3:
SAHV_0426 (set13)
Mu50:
SAV0428 (set13)
MW2:
MW0390 (set24)
RF122:
SAB0382 (set3)
ST398:
SAPIG0497
T0131:
SAT0131_00468
TCH60:
HMPREF0772_10088 (set5)
TW20:
SATW20_05050 (set5)
USA300_TCH1516:
USA300HOU_0431 (set24)
VC40:
SAVC_01775
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKLTTIAKATLALGILTTGVFTAESQTGHAKVELDETQRKYYINMLHQYYSEESFEPTNI
N315 MKLTALAKATLALGILTTGVFTAESKAVHAKVELDETQRKYYINMLHQYYSEESFESTNI
NCTC8325 MKLTTIAKATLALGILTTGVFTAESQTGHAKVELDETQRKYYINMLHQYYSEESFEPTNI
Newman MKLTTIAKATLALGILTTGVFTAESQTGHAKVELDETQRKYYINMLHQYYSEESFEPTNI
USA300_FPR3757 MKLTTIAKATLALGILTTGVFTAESQTGHAKVELDETQRKYYINMLHQYYSEESFEPTNI
****::*******************:: ****************************.***
COL SVKSEDYYGSNVLNFKQRNKAFKVFLLGDDKNKYKEKTHGLDVFAVPELIDIKGGIYSVG
N315 SVKSEDYYGSNVLNFNQRNKTFKVFLLGDDKNKYKEKTHGLDVFAVPELIDIKGGIYSVG
NCTC8325 SVKSEDYYGSNVLNFKQRNKAFKVFLLGDDKNKYKEKTHGLDVFAVPELIDIKGGIYSVG
Newman SVKSEDYYGSNVLNFKQRNKAFKVFLLGDDKNKYKEKTHGLDVFAVPELIDIKGGIYSVG
USA300_FPR3757 SVKSEDYYGSNVLNFKQRNKAFKVFLLGDDKNKYKEKTHGLDVFAVPELIDIKGGIYSVG
***************:****:***************************************
COL GITKKNVRSVFGFVSNPSLQVKKVDAKNGFSINELFFIQKEEVSLKELDFKIRKLLIEKY
N315 GITKKNVRSVFGFVSNPSLQVKKVDAKHGFSINELFFIQKEEVSLKELDFKIRKMLVEKY
NCTC8325 GITKKNVRSVFGFVSNPSLQVKKVDAKNGFSINELFFIQKEEVSLKELDFKIRKLLIEKY
Newman GITKKNVRSVFGFVSNPSLQVKKVDAKNGFSINELFFIQKEEVSLKELDFKIRKLLIEKY
USA300_FPR3757 GITKKNVRSVFGFVSNPSLQVKKVDAKNGFSINELFFIQKEEVSLKELDFKIRKLLIEKY
***************************:**************************:*:***
COL RLYKGTSDKGRIVINMKDEKKHEIDLSEKLSFERMFDVMDSKQIKNIEVNLN
N315 RLYKGASDKGRIVINMKDEKKYVIDLSEKLSFDRMFDVMDSKQIKNIEVNLN
NCTC8325 RLYKGTSDKGRIVINMKDEKKHEIDLSEKLSFERMFDVMDSKQIKNIEVNLN
Newman RLYKGTSDKGRIVINMKDEKKHEIDLSEKLSFERMFDVMDSKQIKNIEVNLN
USA300_FPR3757 RLYKGTSDKGRIVINMKDEKKHEIDLSEKLSFERMFDVMDSKQIKNIEVNLN
*****:***************: *********:*******************