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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002198000
- symbol?: dnaX
- synonym:
- description?: DNA polymerase III subunit gamma/tau
- DNA polymerase III subunit gamma/tau
- DNA polymerase III subunits gamma and tau
- DNA polymerase III, gamma and tau subunits
- DNA polymerase III gamma subunit
- DNA polymerase III subunit gamma and tau
- DNA-directed DNA polymerase III gamma and tau subunits
- DNA-directed DNA polymerase III subunit gamma and tau
- DNA polymerase III, subunit gamma and tau
- DNA polymerase III, tau subunit
- DNA polymerase III gamma and tau subunits
- DNA polymerase III subunit gamma/tau DnaX
- DNA polymerase III subunit tau
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2702997..2704694
- synteny block?: BlockID0014990
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0453 (dnaX)
08BA02176:
C248_0529 (dnaX)
11819-97:
MS7_0452 (dnaX)
6850:
RSAU_000412 (dnaX)
71193:
ST398NM01_0544
ECT-R 2:
ECTR2_413 (dnaX)
ED133:
SAOV_0496
ED98:
SAAV_0422 (dnaX)
HO 5096 0412:
SAEMRSA15_04040 (dnaX)
JH1:
SaurJH1_0512
JH9:
SaurJH9_0499
JKD6008:
SAA6008_00482 (dnaX)
JKD6159:
SAA6159_00427 (dnaX)
LGA251:
SARLGA251_04110 (dnaX)
M013:
M013TW_0443
MRSA252:
SAR0477 (dnaX)
MSHR1132:
SAMSHR1132_04220
MSSA476:
SAS0435
Mu3:
SAHV_0475 (dnaX)
Mu50:
SAV0478 (dnaX)
MW2:
MW0433 (dnaX)
RF122:
SAB0427 (dnaX)
ST398:
SAPIG0544
T0131:
SAT0131_00519
TCH60:
HMPREF0772_10044 (dnaX)
TW20:
SATW20_05460 (dnaX)
USA300_TCH1516:
USA300HOU_0477 (dnaZX)
VC40:
SAVC_01975
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNYQALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAK
N315 MNYQALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAK
NCTC8325 --------MYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAK
Newman MNYQALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAK
USA300_FPR3757 --------MYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAK
****************************************************
COL AINCLNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKY
N315 AINCLNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKY
NCTC8325 AINCLNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKY
Newman AINCLNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKY
USA300_FPR3757 AINCLNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKY
************************************************************
COL KVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISL
N315 KVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISL
NCTC8325 KVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISL
Newman KVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISL
USA300_FPR3757 KVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISL
************************************************************
COL DQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV
N315 DQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV
NCTC8325 DQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV
Newman DQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV
USA300_FPR3757 DQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV
************************************************************
COL TGSVHDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEK
N315 TGSVHDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEK
NCTC8325 TGSVHDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEK
Newman TGSVHDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEK
USA300_FPR3757 TGSVHDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSEK
************************************************************
COL DTEYRALMNLELDMLYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLAEQIKGQPQVIANV
N315 DTEYRALMNLELDMLYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLAEQIKGQPQVIANV
NCTC8325 DTEYRALMNLELDMLYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLAEQIKGQPQVIANV
Newman DTEYRALMNLELDMLYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLAEQIKGQPQVIANV
USA300_FPR3757 DTEYRALMNLELDMLYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLAEQIKGQPQVIANV
************************************************************
COL AEPAQIASSPNTDVLLQRMEQLEQELKTLKAQGVSVAPVQKSSKKPARGIQKSKNAFSMQ
N315 AEPAQIASSPNTDVLLQRMEQLEQELKTLKAQGVSVAPAQKSSKKPARGIQKSKNAFSMQ
NCTC8325 AEPAQIASSPNTDVLLQRMEQLEQELKTLKAQGVSVAPVQKSSKKPARGIQKSKNAFSMQ
Newman AEPAQIASSPNTDVLLQRMEQLEQELKTLKAQGVSVAPVQKSSKKPARGIQKSKNAFSMQ
USA300_FPR3757 AEPAQIASSPNTDVLLQRMEQLEQELKTLKAQGVSVAPVQKSSKKPARGIQKSKNAFSMQ
**************************************.*********************
COL QIAKVLDKANKADIKLLKDHWQEVIDHAKNNDKKSLVSLLQNSEPVAASEDHVLVKFEEE
N315 QIAKVLDKANKADIKLLKDHWQEVIDHAKNNDKKSLVSLLQNSEPVAASEDHVLVKFEEE
NCTC8325 QIAKVLDKANKADIKLLKDHWQEVIDHAKNNDKKSLVSLLQNSEPVAASEDHVLVKFEEE
Newman QIAKVLDKANKADIKLLKDHWQEVIDHAKNNDKKSLVSLLQNSEPVAASEDHVLVKFEEE
USA300_FPR3757 QIAKVLDKANKADIKLLKDHWQEVIDHAKNNDKKSLVSLLQNSEPVAASEDHVLVKFEEE
************************************************************
COL IHCEIVNKDDEKRSSIESVVCNIVNKNVKVVGVPSDQWQRVRTEYLQNRKNEGDDMPKQQ
N315 IHCEIVNKDDEKRSSIESVVCNIVNKNVKVVGVPSDQWQRVRTEYLQNRKNEGDDMPKQQ
NCTC8325 IHCEIVNKDDEKRSSIESVVCNIVNKNVKVVGVPSDQWQRVRTEYLQNRKNEGDDMPKQQ
Newman IHCEIVNKDDEKRSSIESVVCNIVNKNVKVVGVPSDQWQRVRTEYLQNRKNEGDDMPKQQ
USA300_FPR3757 IHCEIVNKDDEKRSSIESVVCNIVNKNVKVVGVPSDQWQRVRTEYLQNRKNEGDDMPKQQ
************************************************************
COL AQQTDIAQKAKDLFGEETVHVIDEE
N315 AQQTDIAQKAKDLFGEETVHVIDEE
NCTC8325 AQQTDIAQKAKDLFGEETVHVIDEE
Newman AQQTDIAQKAKDLFGEETVHVIDEE
USA300_FPR3757 AQQTDIAQKAKDLFGEETVHVIDEE
*************************