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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002288000
- symbol?: mcsA
- synonym:
- description?: excinuclease ABC subunit B
- excinuclease ABC subunit B
- UvrB/UvrC motif-containing protein
- UvrB/UvrC domain protein
- Nucleotide excision repair protein, with UvrB/UvrC motif
- ClpC ATPase
- modulator of heat shock repressor CtsR
- UvrB/UvrC motif domain protein
- uvrB/uvrC motif family protein
- UvrB/UvrC protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2809119..2809685
- synteny block?: BlockID0015870
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0498
08BA02176:
C248_0595
11819-97:
MS7_0512
6850:
RSAU_000474
71193:
ST398NM01_0598
ECT-R 2:
ECTR2_476
ED133:
SAOV_0558
ED98:
SAAV_0484
HO 5096 0412:
SAEMRSA15_04490
JH1:
SaurJH1_0559
JH9:
SaurJH9_0545
JKD6008:
SAA6008_00529
JKD6159:
SAA6159_00476 (cstR)
LGA251:
SARLGA251_04580
M013:
M013TW_0507
MRSA252:
SAR0526
MSHR1132:
SAMSHR1132_04670
MSSA476:
SAS0480
Mu3:
SAHV_0520
Mu50:
SAV0523
MW2:
MW0478
RF122:
SAB0473
ST398:
SAPIG0598
T0131:
SAT0131_00573
TCH60:
HMPREF0772_12668
TW20:
SATW20_05920
USA300_TCH1516:
USA300HOU_0516
VC40:
SAVC_02200
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MLCENCQLNEAELKVKVTSKNKTEEKMVCQTCAEGHHPWNQANEQPEYQEHQDNFEEAFV
N315 MLCENCQLNEAELKVKVTSKNKTEEKMVCQTCAEGHHPWNQANEQPEYQEHQDNFEEAFV
NCTC8325 --------------------------MVCQTCAEGHHPWNQANEQPEYQEHQDNFEEAFV
Newman --------------------------MVCQTCAEGHHPWNQANEQPEYQEHQDNFEEAFV
USA300_FPR3757 --------------------------MVCQTCAEGHHPWNQANEQPEYQEHQDNFEEAFV
**********************************
COL VKQILQHLATKHGINFQEVAFKEEKRCPSCHMTLKDIAHVGKFGCANCYATFKDDIIDIV
N315 VKQILQHLATKHGINFQEVAFKEEKRCPSCHMTLKDIAHVGKFGCANCYATFKDDIIDIV
NCTC8325 VKQILQHLATKHGINFQEVAFKEEKRCPSCHMTLKDIAHVGKFGCANCYATFKDDIIDIV
Newman VKQILQHLATKHGINFQEVAFKEEKRCPSCHMTLKDIAHVGKFGCANCYATFKDDIIDIV
USA300_FPR3757 VKQILQHLATKHGINFQEVAFKEEKRCPSCHMTLKDIAHVGKFGCANCYATFKDDIIDIV
************************************************************
COL RRVQGGQFEHVGKTPHSSHKKIALKRKIEEKNEYLKKLIEIQDFEEAAIVRDEIKALKAE
N315 RRVQGGQFEHVGKTPHSSHKKIALKRKIEEKNEYLKKLIEIQDFEEAAIVRDEIKALKAE
NCTC8325 RRVQGGQFEHVGKTPHSSHKKIALKRKIEEKNEYLKKLIEIQDFEEAAIVRDEIKALKAE
Newman RRVQGGQFEHVGKTPHSSHKKIALKRKIEEKNEYLKKLIEIQDFEEAAIVRDEIKALKAE
USA300_FPR3757 RRVQGGQFEHVGKTPHSSHKKIALKRKIEEKNEYLKKLIEIQDFEEAAIVRDEIKALKAE
************************************************************
COL SEVQHDDA
N315 SEVQHDDA
NCTC8325 SEVQHDDA
Newman SEVQHDDA
USA300_FPR3757 SEVQHDDA
********