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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002292000
- symbol?: radA
- synonym:
- description?: DNA repair protein RadA
- DNA repair protein RadA
- putative DNA repair protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2813660..2815024
- synteny block?: BlockID0015910
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0501 (radA)
08BA02176:
C248_0598 (radA)
11819-97:
MS7_0515 (radA)
6850:
RSAU_000477 (radA)
71193:
ST398NM01_0601
ECT-R 2:
ECTR2_479 (radA)
ED133:
SAOV_0561
ED98:
SAAV_0487 (radA)
HO 5096 0412:
SAEMRSA15_04520 (radA)
JH1:
SaurJH1_0562
JH9:
SaurJH9_0548
JKD6008:
SAA6008_00532 (radA)
JKD6159:
SAA6159_00479 (radA)
LGA251:
SARLGA251_04610 (radA)
M013:
M013TW_0510
MRSA252:
SAR0529 (radA)
MSHR1132:
SAMSHR1132_04700
MSSA476:
SAS0483
Mu3:
SAHV_0523 (radA)
Mu50:
SAV0526 (radA)
MW2:
MW0481 (radA)
RF122:
SAB0476 (radA)
ST398:
SAPIG0601 (radA)
T0131:
SAT0131_00578
TCH60:
HMPREF0772_12665 (radA)
TW20:
SATW20_05950 (radA)
USA300_TCH1516:
USA300HOU_0519 (radA)
VC40:
SAVC_02215
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKELAGKVQKLN
N315 MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKELAGKVQKLN
NCTC8325 MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKELAGKVQKLN
Newman MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKELAGKVQKLN
USA300_FPR3757 MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKELAGKVQKLN
************************************************************
COL SIKHETTPRVLTDSAEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKKKVLY
N315 SIKHETTPRVLTDSAEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKKKVLY
NCTC8325 SIKHETTPRVLTDSAEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKKKVLY
Newman SIKHETTPRVLTDSAEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKKKVLY
USA300_FPR3757 SIKHETTPRVLTDSAEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKKKVLY
************************************************************
COL ITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVKEEQPDLLVVDSIQTIYHPEI
N315 ITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVKEEQPDLLVVDSIQTIYHPEI
NCTC8325 ITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVKEEQPDLLVVDSIQTIYHPEI
Newman ITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVKEEQPDLLVVDSIQTIYHPEI
USA300_FPR3757 ITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVKEEQPDLLVVDSIQTIYHPEI
************************************************************
COL SSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
N315 SSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
NCTC8325 SSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
Newman SSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
USA300_FPR3757 SSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
************************************************************
COL HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTNVPGSTIVATMEGT
N315 HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTNVPGSTIVATMEGT
NCTC8325 HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTNVPGSTIVATMEGT
Newman HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTNVPGSTIVATMEGT
USA300_FPR3757 HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTNVPGSTIVATMEGT
************************************************************
COL RPLLIEVQALVTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVK
N315 RPLLIEVQALVTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVK
NCTC8325 RPLLIEVQALVTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVK
Newman RPLLIEVQALVTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVK
USA300_FPR3757 RPLLIEVQALVTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVK
************************************************************
COL LTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRIEQRVQEAAKLGFKRV
N315 LTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRIEQRVQEAAKLGFKRV
NCTC8325 LTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRIEQRVQEAAKLGFKRV
Newman LTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRIEQRVQEAAKLGFKRV
USA300_FPR3757 LTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRIEQRVQEAAKLGFKRV
************************************************************
COL IIPKNNIGGWTYPEGIQVIGVTTVHEVLSFALHS
N315 IIPKNNIGGWTYPEGIQVIGVTTVHEALSFALHS
NCTC8325 IIPKNNIGGWTYPEGIQVIGVTTVHEVLSFALHS
Newman IIPKNNIGGWTYPEGIQVIGVTTVHEVLSFALHS
USA300_FPR3757 IIPKNNIGGWTYPEGIQVIGVTTVHEVLSFALHS
**************************.*******