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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002492000
- symbol?: —
- synonym:
- description?: recombinase
- recombinase
- DNA integration/recombination/inversion protein, putative
- integrase/recombinase
- phage integrase family protein
- phage integrase integrase/recombinase
- site-specific recombinase
- tyrosine-type recombinase/integrase
- bacteriophage integrase
- DNA integration/recombination/inversion protein
- DNA integration/recombination/invertion protein
- integrase/recombinase, phage integrase family
- phage integrase family integrase/recombinase
- phage recombinase/integrase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3005477..3006037
- synteny block?: BlockID0017280
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0597
08BA02176:
C248_0704
11819-97:
MS7_0673
6850:
RSAU_000577
71193:
ST398NM01_0701
ECT-R 2:
ECTR2_573
ED133:
SAOV_0657
ED98:
SAAV_0585
HO 5096 0412:
SAEMRSA15_05480
JH1:
SaurJH1_0659
JH9:
SaurJH9_0644
JKD6008:
SAA6008_00639
JKD6159:
SAA6159_00577
LGA251:
SARLGA251_05560
M013:
M013TW_0609
MRSA252:
SAR0629
MSHR1132:
SAMSHR1132_05650
MSSA476:
SAS0588
Mu3:
SAHV_0618
Mu50:
SAV0620
MW2:
MW0584
RF122:
SAB0572
ST398:
SAPIG0701
T0131:
SAT0131_00689
TCH60:
HMPREF0772_12567
TW20:
SATW20_06970
USA300_TCH1516:
USA300HOU_0642
VC40:
SAVC_02745
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNKVEAIKFNDDIVKMYEALKIKSERDYLFFKLAIHSGLKVSELLTITVSQVKRLIEKCT
N315 MNKVEAIKFNDDIVKMYEALKIKSERDYLFFKLAIHSGLKVSELLTITVSQVKRLIEKCT
NCTC8325 MNKVEAIKFNDDIVKMYEALKIKSERDYLFFKLAIHSGLKVSELLTITVSQVKRLIEKCT
Newman MNKVEAIKFNDDIVKMYEALKIKSERDYLFFKLAIHSGLKVSELLTITVSQVKRLIEKCT
USA300_FPR3757 MNKVEAIKFNDDIVKMYEALKIKSERDYLFFKLAIHSGLKVSELLTITVSQVKRLIEKCT
************************************************************
COL LSEMCKAHFHSLIKIRLPETLSKELLQYIEDRSLSNEDVLFQSLRTNQVLSRQQAYRIIH
N315 LSEMCKAHFHSLIKIRLPETLSKELLQYIEDRSLSNEDVLFQSLRTNQVLSRQQAYRIIH
NCTC8325 LSEMCKAHFHSLIKIRLPETLSKELLQYIEDRSLSNEDVLFQSLRTNQVLSRQQAYRIIH
Newman LSEMCKAHFHSLIKIRLPETLSKELLQYIEDRSLSNEDVLFQSLRTNQVLSRQQAYRIIH
USA300_FPR3757 LSEMCKAHFHSLIKIRLPETLSKELLQYIEDRSLSNEDVLFQSLRTNQVLSRQQAYRIIH
************************************************************
COL QASIEAGIDNVGLTTLRKTFAYHAYQKGIPIPVIQKYLGHQSAIETLNFIGLENECEHSI
N315 QASIEAGIDNVGLTTLRKTFAYHAYQKGIPIPVIQKYLGHQSAIETLNFIGLENECEHSI
NCTC8325 QASIEAGIDNVGLTTLRKTFAYHAYQKGILIPVIQKYLGHQSAIETLNFIGLENECEHSI
Newman QASIEAGIDNVGLTTLRKTFAYHAYQKGIPIPVIQKYLGHQSAIETLNFIGLENECEHSI
USA300_FPR3757 QASIEAGIDNVGLTTLRKTFAYHAYQKGIPIPVIQKYLGHQSAIETLNFIGLENECEHSI
***************************** ******************************
COL YISLQL
N315 YISLQL
NCTC8325 YISLQL
Newman YISLQL
USA300_FPR3757 YISLQL
******