From AureoWiki
Jump to navigation Jump to search

Summary[edit | edit source]

  • pan ID?: SAUPAN003400000
  • symbol?:
  • synonym:
  • description?: membrane protein

      descriptions from strain specific annotations:

    • membrane protein
    • membrane spanning protein
  • strand?: +
  • coordinates?: 3757148..3757654
  • synteny block?: BlockID0024830
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1113
    08BA02176:
    C248_1185
    11819-97:
    MS7_1113
    6850:
    RSAU_001039
    71193:
    ST398NM01_1153
    ECT-R 2:
    ECTR2_1011
    ED133:
    SAOV_1154
    ED98:
    SAAV_1125
    HO 5096 0412:
    SAEMRSA15_09860
    JH1:
    SaurJH1_1238
    JH9:
    SaurJH9_1214
    JKD6008:
    SAA6008_01110
    JKD6159:
    SAA6159_01009
    LGA251:
    SARLGA251_10670
    M013:
    M013TW_1089
    MRSA252:
    SAR1129
    MSHR1132:
    SAMSHR1132_10010
    MSSA476:
    SAS1090
    Mu3:
    SAHV_1147
    Mu50:
    SAV1157
    MW2:
    MW1039
    RF122:
    SAB1020
    ST398:
    SAPIG1153
    T0131:
    SAT0131_01200
    TCH60:
    HMPREF0772_12077
    TW20:
    SATW20_11490
    USA300_TCH1516:
    USA300HOU_1093
    VC40:
    SAVC_04940

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFI
    N315            MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFI
    NCTC8325        MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFI
    Newman          MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFI
    USA300_FPR3757  MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFI
                    ************************************************************

    COL             TIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAV
    N315            TIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAV
    NCTC8325        TIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAV
    Newman          TIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAV
    USA300_FPR3757  TIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAV
                    ************************************************************

    COL             NEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
    N315            NEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
    NCTC8325        NEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
    Newman          NEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
    USA300_FPR3757  NEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
                    ************************************************