From AureoWiki
Jump to navigation Jump to search

Summary[edit | edit source]

  • pan ID?: SAUPAN003496000
  • symbol?:
  • synonym:
  • description?: lipoprotein, putative

      descriptions from strain specific annotations:

    • lipoprotein, putative
    • putative lipoprotein
    • lipoprotein
    • pseudogene
  • strand?: +
  • coordinates?: 3836413..3837405
  • synteny block?: BlockID0025750
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1171
    08BA02176:
    C248_1243
    11819-97:
    MS7_1171
    6850:
    RSAU_001095
    71193:
    ST398NM01_1212
    ECT-R 2:
    ECTR2_1069
    ED133:
    SAOV_1216
    ED98:
    SAAV_1185
    HO 5096 0412:
    SAEMRSA15_10460
    JH1:
    SaurJH1_1297
    JH9:
    SaurJH9_1272
    JKD6008:
    SAA6008_01168
    JKD6159:
    SAA6159_01066
    LGA251:
    SARLGA251_11240
    M013:
    M013TW_1151
    MRSA252:
    SAR1189
    MSHR1132:
    SAMSHR1132_10540
    MSSA476:
    SAS1147
    Mu3:
    SAHV_1203
    Mu50:
    SAV1213
    MW2:
    MW1096
    RF122:
    SAB1077
    ST398:
    SAPIG1212
    T0131:
    SAT0131_01262 (moaB)
    TCH60:
    HMPREF0772_12019
    TW20:
    SATW20_12070
    USA300_TCH1516:
    USA300HOU_1151
    VC40:
    SAVC_05230

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MKKTLGCLLLIMLLVVAGCSFGGNHKLSSKKSEESKQETVKKESEEEKDPDLEKYEEIEK
    N315            MKKTLGCLLLIMLLVVAGCSFGGNHKLSSKKSEESKQETVKKESEEEKDPDLEKYEEIEK
    NCTC8325        MKKTLGCLLLIMLLVVAGCSFGGNHKLSSKKSEESKQETVKKESEEEKDPDLEKYEEIEK
    Newman          MKKTLGCLLLIMLLVVAGCSFGGNHKLSSKKSEESKQETVKKESEEEKDPDLEKYEEIEK
    USA300_FPR3757  MKKTLGCLLLIMLLVVAGCSFGGNHKLSSKKSEESKQETVKKESEEEKDPDLEKYEEIEK
                    ************************************************************

    COL             KMKGIKDAPSLDKLDPLMTEKSFTNSKGIQGWKDYKELMGKVELADYRFTKDSKGSSIKD
    N315            KMKGIKDAPSLDKLDPLMTEKSFTNSKGIQGWKDYKELMGKVELADYRFTKDSKGSSIKD
    NCTC8325        KMKGIKDAPSLDKLDPLMTEKSFTNSKGIQGWKDYKELMGKVELADYRFTKDSKGSSIKD
    Newman          KMKGIKDAPSLDKLDPLMTEKSFTNSKGIQGWKDYKELMGKVELADYRFTKDSKGSSIKD
    USA300_FPR3757  KMKGIKDAPSLDKLDPLMTEKSFTNSKGIQGWKDYKELMGKVELADYRFTKDSKGSSIKD
                    ************************************************************

    COL             VDAFFKGKKGIKRKVIETHDDVKQVDYWYVDPDGKKIGNSNTPVFYAEIMTKYKDGKLVY
    N315            VDAFFKGKKGIKRKVIETHDDVKQVDYWYVDPDGKKIGNSNTPVFYAEIMTKYKDGKLVY
    NCTC8325        VDAFFKGKKGIKRKVIETHDDVKQVDYWYVDPDGKKIGNSNTPVFYAEIMTKYKDGKLVY
    Newman          VDAFFKGKKGIKRKVIETHDDVKQVDYWYVDPDGKKIGNSNTPVFYAEIMTKYKDGKLVY
    USA300_FPR3757  VDAFFKGKKGIKRKVIETHDDVKQVDYWYVDPDGKKIGNSNTPVFYAEIMTKYKDGKLVY
                    ************************************************************

    COL             ASVEPGSYVIHKDDAIKYDDYSKLKKLSQLTKLDHPKPVPYSVAQIKSFGVPLTSVSFMT
    N315            ASVEPGSYVIHKDDAIKYDDYSKLKKLSQLTKLDHPKPVPYSVAQIKSFGVPLTSVSFMT
    NCTC8325        ASVEPGSYVIHKDDAIKYDDYSKLKKLSQLTKLDHPKPVPYSVAQIKSFGVPLTSVSFMT
    Newman          ASVEPGSYVIHKDDAIKYDDYSKLKKLSQLTKLDHPKPVPYSVAQIKSFGVPLTSVSFMT
    USA300_FPR3757  ASVEPGSYVIHKDDAIKYDDYSKLKKLSQLTKLDHPKPVPYSVAQIKSFGVPLTSVSFMT
                    ************************************************************

    COL             HGSKDTKDEVLPALAYFTFSPKNYEDKSNPDPKVLNLVHMDFLNASSDFGNAHFVVLSKY
    N315            HGSKDTKDEVLPALAYFTFSPKNYEDKSNPDPKVLNLVHMDFLNASSDFGNAHFVVLSKY
    NCTC8325        HGSKDTKDEVLPALAYFTFSPKNYEDKSNPDPKVLNLVHMDFLNASSDFGNAHFVVLSKY
    Newman          HGSKDTKDEVLPALAYFTFSPKNYEDKSNPDPKVLNLVHMDFLNASSDFGNAHFVVLSKY
    USA300_FPR3757  HGSKDTKDEVLPALAYFTFSPKNYEDKSNPDPKVLNLVHMDFLNASSDFGNAHFVVLSKY
                    ************************************************************

    COL             IKEYESNYETASDDSLK
    N315            IKEYESNYETASDDSLK
    NCTC8325        IKEYESNYETASDDSLK
    Newman          IKEYESNYETASDDSLK
    USA300_FPR3757  IKEYESNYETASDDSLK
                    *****************