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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003765000
- symbol?: trpC
- synonym:
- description?: indole-3-glycerol-phosphate synthase
- indole-3-glycerol-phosphate synthase
- indole-3-glycerol phosphate synthase, putative
- indole-3-glycerol phosphate synthase TrpC
- indole-3-glycerol phosphate synthase (IGPS)
- indole-3-glycerol phosphate synthase family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4062767..4063445
- synteny block?: BlockID0028270
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1324 (trpC)
08BA02176:
C248_1408 (trpC)
11819-97:
MS7_1327
6850:
RSAU_001251 (trpC)
71193:
ST398NM01_1371
ECT-R 2:
ECTR2_1227
ED133:
SAOV_1380
ED98:
SAAV_1352 (trpC)
HO 5096 0412:
SAEMRSA15_12180 (trpC)
JH1:
SaurJH1_1460 (trpC)
JH9:
SaurJH9_1431 (trpC)
JKD6008:
SAA6008_01335 (trpC)
JKD6159:
SAA6159_01236 (trpC)
LGA251:
SARLGA251_12790 (trpC)
M013:
M013TW_1316
MRSA252:
SAR1383 (trpC)
MSHR1132:
SAMSHR1132_12130
MSSA476:
SAS1310 (trpC)
Mu3:
SAHV_1358 (trpC)
Mu50:
SAV1370 (trpC)
MW2:
MW1257 (trpC)
RF122:
SAB1225 (trpC)
ST398:
SAPIG1371 (trpC)
T0131:
SAT0131_01442
TCH60:
HMPREF0772_11837 (trpC)
TW20:
SATW20_13700 (trpC)
USA300_TCH1516:
USA300HOU_1305 (trpC)
VC40:
SAVC_06100 (trpC)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTILSEIVKYKQSLLQNGYYQDKLNTLKSVKIQNKKSFINAIEKEPKLAIIAEIKSKSPT
N315 MTILAEIVKYKQSLLQNGYYQDKLNTLKSVKIQNKKSFINAIEKEPKLAIIAEIKSKSPT
NCTC8325 MTILSEIVKYKQSLLQNGYYQDKLNTLKSVKIQNKKSFINAIEKEPKLAIIAEIKSKSPT
Newman MTILSEIVKYKQSLLQNGYYQDKLNTLKSVKIQNKKSFINAIEKEPKLAIIAEIKSKSPT
USA300_FPR3757 MTILSEIVKYKQSLLQNGYYQDKLNTLKSVKIQNKKSFINAIEKEPKLAIIAEIKSKSPT
****:*******************************************************
COL VNDLPERDLSQQISDYDQYGANAVSILTDEKYFSGSFERLQALTTKTTLPVLCKDFIIDP
N315 VNDLPERDLSQQISDYEKYGANAVSILTDEKYFGGSFERLQALTTKTTLPVLCKDFIIDP
NCTC8325 VNDLPERDLSQQISDYDQYGANAVSILTDEKYFGGSFERLQALTTKTTLPVLCKDFIIDP
Newman VNDLPERDLSQQISDYDQYGANAVSILTDEKYFSGSFERLQALTTKTTLPVLCKDFIIDP
USA300_FPR3757 VNDLPERDLSQQISDYDQYGANAVSILTDEKYFGGSFERLQALTTKTTLPVLCKDFIIDP
****************::***************.**************************
COL LQIDVAKQAGASMILLIVNILSDKQLKDLYNYAISQNLEVLVEVHDRHELERAYKVNAKL
N315 LQIDVAKQAGASMILLIVNILSDKQLKDLYNYAISQNLEVLIEVHDRHELERAYKVNAKL
NCTC8325 LQIDVAKQAGASMILLIVNILSDKQLKDLYNYAISQNLEVLVEVHDRHELERAYKVNAKL
Newman LQIDVAKQAGASMILLIVNILSDKQLKDLYNYAISQNLEVLVEVHDRHELERAYKVNAKL
USA300_FPR3757 LQIDVAKQAGASMILLIVNILSDKQLKDLYNYAISQNLEVLVEVHDRHELERAYKVNAKL
*****************************************:******************
COL IGVNNRDLKRFVTNVEHTNTILENKKTNHYYISESGIHDASDVRKILHSGIDGLLIGEAL
N315 IGVNNRDLKRFVTNVEHTNTILENKKPNHHYISESGIHDASDVRKILHSGIDGLLIGEAL
NCTC8325 IGVNNRDLKRFVTNVEHTNTILENKKTNHYYISESGIHDASDVRKILHSGIDGLLIGEAL
Newman IGVNNRDLKRFVTNVEHTNTILENKKTNHYYISESGIHDASDVRKILHSGIDGLLIGEAL
USA300_FPR3757 IGVNNRDLKRFVTNVEHTNTILENKKTNHYYISESGIHDASDVRKILHSGIDGLLIGEAL
**************************.**:******************************
COL MRCDNLSEFLPQLKMQKVKS
N315 MRCDNLSEFLPQLKMQKVKS
NCTC8325 MRCDNLSEFLPQLKMQKVKS
Newman MRCDNLSEFLPQLKMQKVKS
USA300_FPR3757 MRCDNLSEFLPQLKMQKVKS
********************