Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN003785000
- symbol?: nikD
- synonym: opp2D
- description?: peptide ABC transporter ATP-binding protein
- peptide ABC transporter ATP-binding protein
- ABC transporter ATP-binding protein
- oligopeptide ABC transporter, ATP-binding protein, putative
- oligopeptide transport ATPase
- oligopeptide transporter ATPase
- ABC superfamily ATP binding cassette transporter, ABC protein
- ABC transporter
- ABC transporter family protein
- ABC-type dipeptide/oligopeptide/nickel transporter, ATPase component 2
- ABC-type dipeptide/oligopeptide/nickel transport system, ATP-binding protein
- dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein
- nickel transport ATP-binding protein
- oligopeptide ABC transporter ATP-binding protein
- Putative oligopeptide transport ATP-binding protein oppD2
- putative oligopeptide transporter ATPase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4078774..4080175
- synteny block?: BlockID0028420
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1334 (opp-2D)
08BA02176:
C248_1417
11819-97:
MS7_1337
6850:
RSAU_001260 (oppD3)
71193:
ST398NM01_1380
ECT-R 2:
ECTR2_1237
ED133:
SAOV_1389c
ED98:
SAAV_1362
HO 5096 0412:
SAEMRSA15_12440
JH1:
SaurJH1_1470
JH9:
SaurJH9_1441
JKD6008:
SAA6008_01344 (nikD)
JKD6159:
SAA6159_01247 (nikD)
LGA251:
SARLGA251_12970
M013:
M013TW_1325
MRSA252:
SAR1393
MSHR1132:
SAMSHR1132_12220
MSSA476:
SAS1321
Mu3:
SAHV_1368
Mu50:
SAV1380
MW2:
MW1268 (opp-2D)
RF122:
SAB1235c
ST398:
SAPIG1380
T0131:
SAT0131_01451
TCH60:
HMPREF0772_11828 (oppD)
TW20:
SATW20_13790
USA300_TCH1516:
USA300HOU_1314
VC40:
SAVC_06145
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSLIDIQNLTIKNTSEKSLIKGIDLKIFSQQINALIGESGAGKSLIAKALLEYLPFDLSC
N315 MSLIDIQNLTIKNTCEKYLIKGIDLKIFSQQINALIGESGAGKSLIAKALLEYLPFDLSC
NCTC8325 MSLIDIQNLTIKNTSEKSLIKGIDLKIFSQQINALIGESGAGKSLIAKALLEYLPFDLSC
Newman MSLIDIQNLTIKNTSEKSLIKGIDLKIFSQQINALIGESGAGKSLIAKALLEYLPFDLSC
USA300_FPR3757 MSLIDIQNLTIKNTSEKSLIKGIDLKIFSQQINALIGESGAGKSLIAKALLEYLPFDLSC
**************.** ******************************************
COL TYDSYQFDGENVSRLSQYYGHTIGYISQNYAESFNDHTKLGKQLTAIYRKHYKGSKEEAL
N315 TYDSYQFDGENISRLSQYYGHTIGYISQNYAESFNDHTKLGKQLTAIYRKHYKSSKEEAL
NCTC8325 TYDSYQFDGENVSRLSQYYGHTIGYISQNYAESFNDHTKLGKQLTAIYRKHYKGSKEEAL
Newman TYDSYQFDGENVSRLSQYYGHTIGYISQNYAESFNDHTKLGKQLTAIYRKHYKGSKEEAL
USA300_FPR3757 TYDSYQFDGENVSRLSQYYGHTIGYISQNYAESFNDHTKLGKQLTAIYRKHYKGSKEEAL
***********:*****************************************.******
COL SKVDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVLMLEPKLIIADEPVASLDALNG
N315 SKIDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVLMLEPKLIIADEPVASLDALNG
NCTC8325 SKVDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVLMLEPKLIIADEPVASLDALNG
Newman SKVDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVLMLEPKLIIADEPVASLDALNG
USA300_FPR3757 SKVDKALSWVNLQSKDILNKYSFQLSGGQLERVYIASVLMLEPKLIIADEPVASLDALNG
**:*********************************************************
COL NQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYIYVLKEGQIIERGNINHFKYEHLHPY
N315 NQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYIYVLKEGQIIERGNINHFKYEHLHPY
NCTC8325 NQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYIYVLKEGQIIERGNINHFKYEHLHPY
Newman NQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYIYVLKEGQIIERGNINHFKYEHLHPY
USA300_FPR3757 NQVMDLLQHIVLEHGQTLFIITHNLSHVLKYCQYIYVLKEGQIIERGNINHFKYEHLHPY
************************************************************
COL TERLIKYRTQLKRDYYD
N315 TERLIKYRTQLKRDYYD
NCTC8325 TERLIKYRTQLKRDYYD
Newman TERLIKYRTQLKRDYYD
USA300_FPR3757 TERLIKYRTQLKRDYYD
*****************