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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003813000
- symbol?: lysA
- synonym:
- description?: diaminopimelate decarboxylase
- strand?: +
- coordinates?: 4104167..4105432
- synteny block?: BlockID0028700
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1354 (lysA)
08BA02176:
C248_1439 (lysA)
11819-97:
MS7_1356 (lysA)
6850:
RSAU_001279 (lysA)
71193:
ST398NM01_1401
ECT-R 2:
ECTR2_1257 (lysA)
ED133:
SAOV_1409 (lysA)
ED98:
SAAV_1383 (lysA)
HO 5096 0412:
SAEMRSA15_12630 (lysA)
JH1:
SaurJH1_1490
JH9:
SaurJH9_1461
JKD6008:
SAA6008_01364 (lysA)
JKD6159:
SAA6159_01266 (lysA)
LGA251:
SARLGA251_13160 (lysA)
M013:
M013TW_1344
MRSA252:
SAR1412 (lysA)
MSHR1132:
SAMSHR1132_12410
MSSA476:
SAS1341
Mu3:
SAHV_1388 (lysA)
Mu50:
SAV1400 (lysA)
MW2:
MW1288 (lysA)
RF122:
SAB1255 (lysA)
ST398:
SAPIG1401 (lysA)
T0131:
SAT0131_01475
TCH60:
HMPREF0772_11809 (lysA)
TW20:
SATW20_13990 (lysA)
USA300_TCH1516:
USA300HOU_1335 (lysA2)
VC40:
SAVC_06245
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTVKYNQNGELTMDGISLKTIAQSFGTPTIVYDELQIREQMRRYHRAFKDSGLKYNISYA
N315 MTVKYNQNGELTMDGISLKTIAQSFGTPTIVYDELQIREQMRRYHRAFKDSGLKYNISYA
NCTC8325 MTVKYNQNGELTMDGISLKTIAQSFGTPTIVYDELQIREQMRRYHRAFKDSGLKYNISYA
Newman MTVKYNQNGELTMDGISLKTIAQNFGTPTIVYDELQIREQMRRYHRAFKDSGLKYNISYA
USA300_FPR3757 MTVKYNQNGELTMDGISLKTIAQSFGTPTIVYDELQIREQMRRYHRAFKDSGLKYNISYA
***********************.************************************
COL SKAFTCIQMVKLVAEEDLQLDVVSEGELYTALEAGFEPSRIHFHGNNKTKHEIRYALENN
N315 SKAFTCIQMVKLVAEEDLQLDVVSEGELYTALEAGFEPSRIHFHGNNKTKHEIRYALENN
NCTC8325 SKAFTCIQMVKLVAEEDLQLDVVSEGELYTALEAGFEPSRIHFHGNNKTKHEIRYALENN
Newman SKAFTCIQMVKLVAEEDLQLDVVSEGELYTALEAGFEPSRIHFHGNNKTKHEIRYALENN
USA300_FPR3757 SKAFTCIQMVKLVAEEDLQLDVVSEGELYTALEAGFEPSRIHFHGNNKTKHEIRYALENN
************************************************************
COL IGYFVIDSLEEIELIDRYANDTVQVVLRVNPGVEAHTHEFIQTGQEDSKFGLSIQYGLAK
N315 IGYFVIDSLEEIELIDRYANDTVQVVLRVNPGVEAHTHEFIQTGQEDSKFGLSIQYGLAK
NCTC8325 IGYFVIDSLEEIELIDRYANDTVQVVLRVNPGVEAHTHEFIQTGQEDSKFGLSIQYGLAK
Newman IGYFVIDSLEEIELIDRYANDTVQVVLRVNPGVEAHTHEFIQTGQEDSKFGLSIQYGLAK
USA300_FPR3757 IGYFVIDSLEEIELIDRYANDTVQVVLRVNPGVEAHTHEFIQTGQEDSKFGLSIQYGLAK
************************************************************
COL KAIDKVQQSKHLKLKGVHCHIGSQIEGTEAFIETAKIVLRWLKEQGIQVELLNLGGGFGI
N315 KAIDKVQQSKHLKLKGVHCHIGSQIEGTEAFIETAKIVLRWLKEQGIQVELLNLGGGFGI
NCTC8325 KAIDKVQQSKHLKLKGVHCHIGSQIEGTEAFIETAKIVLRWLKEQGIQVELLNLGGGFGI
Newman KAIDKVQQSKHLKLKGVHCHIGSQIEGTEAFIETAKIVLRWLKEQGIQVELLNLGGGFGI
USA300_FPR3757 KAIDKVQQSKHLKLKGVHCHIGSQIEGTEAFIETAKIVLRWLKEQGIQVELLNLGGGFGI
************************************************************
COL KYVEGDESFPIESGIKDITDAIKSEIKVLGIDAPEIGIEPGRSIVGEAGVTLYEVGTIKE
N315 KYVEGDESFPIESGIKDITDAIKSEIKVLGIDAPEIGIEPGRSIVGEAGVTLYEVGTIKE
NCTC8325 KYVEGDESFPIESGIKDITDAIKSEIKVLGIDAPEIGIEPGRSIVGEAGVTLYEVGTIKE
Newman KYVEGDESFPIESGIKDITDAIKSEIKVLGIDAPEIGIEPGRSIVGEAGVTLYEVGTIKE
USA300_FPR3757 KYVEGDESFPIESGIKDITDAIKSEIKVLGIDAPEIGIEPGRSIVGEAGVTLYEVGTIKE
************************************************************
COL IPEINKYVSIDGGMSDHIRTALYDAKYQALLVNRNEEADDSVTIAGKLCESGDIIIKDAK
N315 IPEINKYVSIDGGMSDHIRTALYDAKYQALLVNRNEEADDSVTIAGKLCESGDIIIKDAK
NCTC8325 IPEINKYVSIDGGMSDHIRTALYDAKYQALLVNRNEEADDSVTIAGKLCESGDIIIKDAK
Newman IPEINKYVSIDGGMSDHIRTALYDAKYQALLVNRNEEADDSVTIAGKLCESGDIIIKDAK
USA300_FPR3757 IPEINKYVSIDGGMSDHIRTALYDAKYQALLVNRNEEADDSVTIAGKLCESGDIIIKDAK
************************************************************
COL LPSSVKRGDYLAILSTGAYHYSMASNYNQMQKPSVFFLKDGKAREVIKRQSLRQLIINDT
N315 LPSSVKRGDYLAILSTGAYHYSMASNYNQMQKPSVFFLKDGKAREVIKRQSLRQLIINDT
NCTC8325 LPSSVKRGDYLAILSTGAYHYSMASNYNQMQKPSVFFLKDGKAREVIKRQSLRQLIINDT
Newman LPSSVKRGDYLAILSTGAYHYSMASNYNQMQKPSVFFLKDGKAREVIKRQSLRQLIINDT
USA300_FPR3757 LPSSVKRGDYLAILSTGAYHYSMASNYNQMQKPSVFFLKDGKAREVIKRQSLRQLIINDT
************************************************************
COL K
N315 K
NCTC8325 K
Newman K
USA300_FPR3757 K
*