PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003891000
• symbol^?: —
• synonym:
• description^?: amino acid permease

  descriptions from strain specific annotations:

  • amino acid permease
  • amino acid ABC transporter permease
  • Amino acid permease-associated region
  • amino acid permease family protein
  • APC family amino acid-polyamine-organocation transporter
  • APC family amino acid transporter
  • fructoselysine transporter
  • serine/threonine exchanger SteT
• strand^?: -
• coordinates^?: 4211787..4213122
• synteny block^?: BlockID0029370
• occurrence^?: in 97% of 33 strains

⊟Orthologs

COL:
SACOL1476
N315:
SA1270
NCTC8325:
SAOUHSC_01450
Newman:
NWMN_1347
USA300_FPR3757:
SAUSA300_1329
04-02981:
SA2981_1392
08BA02176:
C248_1476
11819-97:
MS7_1393 (steT)
6850:
—
71193:
ST398NM01_1436
ECT-R 2:
ECTR2_1291
ED133:
SAOV_1446
ED98:
SAAV_1421
HO 5096 0412:
SAEMRSA15_12990
JH1:
SaurJH1_1526
JH9:
SaurJH9_1497
JKD6008:
SAA6008_01405 (frlA)
JKD6159:
SAA6159_01302 (frlA)
LGA251:
SARLGA251_13520
M013:
M013TW_1384
MRSA252:
SAR1449
MSHR1132:
SAMSHR1132_12780
MSSA476:
SAS1380
Mu3:
SAHV_1425
Mu50:
SAV1437
MW2:
MW1326
RF122:
SAB1302c
ST398:
SAPIG1436
T0131:
SAT0131_01525
TCH60:
HMPREF0772_11769
TW20:
SATW20_14370
USA300_TCH1516:
USA300HOU_1374
VC40:
SAVC_06440

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MSNGKELQKNIGFFSAFAIVMGTVIGSGVFFKISNVTEVTGTAGMALFVWFLGGIITICA
  N315            MSNGKELQKNIGFFSAFAIVMGTVIGSGVFFKISNVTEVTGTAGMALFVWFLGGIITICA
  NCTC8325        MSNGKELQKNIGFFSAFAIVMGTVIGSGVFFKISNVTEVTGTAGMALFVWFLGGIITICA
  Newman          MSNGKELQKNIGFFSAFAIVMGTVIGSGVFFKISNVTEVTGTAGMALFVWFLGGIITICA
  USA300_FPR3757  MSNGKELQKNIGFFSAFAIVMGTVIGSGVFFKISNVTEVTGTAGMALFVWFLGGIITICA
                  ************************************************************
  
  COL             GLTAAELAAAIPETGGLTKYIEYTYGDFWGFLSGWAQSFIYFPANVAALSIVFATQLINL
  N315            GLTAAELAAAIPETGGLTKYIEYTYGDFWGFLSGWAQSFIYFPANVAALSIVFATQLINL
  NCTC8325        GLTAAELAAAIPETGGLTKYIEYTYGDFWGFLSGWAQSFIYFPANVAALSIVFATQLINL
  Newman          GLTAAELAAAIPETGGLTKYIEYTYGDFWGFLSGWAQSFIYFPANVAALSIVFATQLINL
  USA300_FPR3757  GLTAAELAAAIPETGGLTKYIEYTYGDFWGFLSGWAQSFIYFPANVAALSIVFATQLINL
                  ************************************************************
  
  COL             FHLSIGSLIPIAIASALSIVLINFLGSKAGGILQSVTLVIKLIPIIVIVIFGIFQSGDIT
  N315            FHLSIGSLIPIAIASALSIVLINFLGSKAGGILQSVTLVIKLIPIIVIVIFGIFQSGDIT
  NCTC8325        FHLSIGSLIPIAIASALSIVLINFLGSKAGGILQSVTLVIKLIPIIVIVIFGIFQSGDIT
  Newman          FHLSIGSLIPIAIASALSIVLINFLGSKAGGILQSVTLVIKLIPIIVIVIFGIFQSGDIT
  USA300_FPR3757  FHLSIGSLIPIAIASALSIVLINFLGSKAGGILQSVTLVIKLIPIIVIVIFGIFQSGDIT
                  ************************************************************
  
  COL             FSLIPTTGNSGNGFFTAIGSGLLATMFAYDGWIHVGNVAGELKNPKRDLPLAISVGIGCI
  N315            FSLIPTTGNSGNGFFTAIGSGLLATMFAYDGWIHVGNVAGELKNPKRDLPLAISVGIGCI
  NCTC8325        FSLIPTTGNSGNGFFTAIGSGLLATMFAYDGWIHVGNVAGELKNPKRDLPLAISVGIGCI
  Newman          FSLIPTTGNSGNGFFTAIGSGLLATMFAYDGWIHVGNVAGELKNPKRDLPLAISVGIGCI
  USA300_FPR3757  FSLIPTTGNSGNGFFTAIGSGLLATMFAYDGWIHVGNVAGELKNPKRDLPLAISVGIGCI
                  ************************************************************
  
  COL             MAVYLLINATFLLTLPIELLAGNLNAASDTSKILFGENGGKIITIGILISVYGTINGYTM
  N315            MAVYLLINATFLLTLPIELLAGNLNAASDTSKILFGENGGKIITIGILISVYGTINGYTM
  NCTC8325        MAVYLLINATFLLTLPIELLAGNLNAASDTSKILFGENGGKIITIGILISVYGTINGYTM
  Newman          MAVYLLINATFLLTLPIELLAGNLNAASDTSKILFGENGGKIITIGILISVYGTINGYTM
  USA300_FPR3757  MAVYLLINATFLLTLPIELLAGNLNAASDTSKILFGENGGKIITIGILISVYGTINGYTM
                  ************************************************************
  
  COL             TGMRVPYAMAERKLLPFSHLFAKLTKSGAPWFGAIIQLIIAIIMMSMGAFDTITNMLIFV
  N315            TGMRVPYAMAERKLLPFSHLFAKLTKSGAPWFGAIIQLIIAIIMMSMGAFDTITNMLIFV
  NCTC8325        TGMRVPYAMAERKLLPFSHLFAKLTKSGAPWFGAIIQLIIAIIMMSMGAFDTITNMLIFV
  Newman          TGMRVPYAMAERKLLPFSHLFAKLTKSGAPWFGAIIQLIIAIIMMSMGAFDTITNMLIFV
  USA300_FPR3757  TGMRVPYAMAERKLLPFSHLFAKLTKSGAPWFGAIIQLIIAIIMMSMGAFDTITNMLIFV
                  ************************************************************
  
  COL             IWLFYCMSFVAVIILRKREPNMERPYKVPLYPIIPLIAILAGSFVLINTLFTQFILAIIG
  N315            IWLFYCMSFVAVIILRKREPNMERPYKVPLYPIIPLIAILAGSFVLINTLFTQFILAIIG
  NCTC8325        IWLFYCMSFVAVIILRKREPNMERPYKVPLYPIIPLIAILAGSFVLINTLFTQFILAIIG
  Newman          IWLFYCMSFVAVIILRKREPNMERPYKVPLYPIIPLIAILAGSFVLINTLFTQFILAIIG
  USA300_FPR3757  IWLFYCMSFVAVIILRKREPNMERPYKVPLYPIIPLIAILAGSFVLINTLFTQFILAIIG
                  ************************************************************
  
  COL             ILITALGIPVYYYKKKQKAS
  N315            ILITALGIPVYYYKKKQKAA
  NCTC8325        ILITALGIPVYYYKKKQKAA
  Newman          ILITALGIPVYYYKKKQKAA
  USA300_FPR3757  ILITALGIPVYYYKKKQKAA
                  *******************: