PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004063000
• symbol^?: gnd
• synonym:
• description^?: 6-phosphogluconate dehydrogenase

  descriptions from strain specific annotations:

  • 6-phosphogluconate dehydrogenase
  • phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)
  • NADP-dependent phosphogluconate dehydrogenase
  • 6-phosphogluconate dehydrogenase, decarboxylating
• strand^?: -
• coordinates^?: 4346141..4347547
• synteny block^?: BlockID0030950
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1554 (gnd)
N315:
SA1342 (gnd)
NCTC8325:
SAOUHSC_01605
Newman:
NWMN_1417 (gnd)
USA300_FPR3757:
SAUSA300_1459 (gnd)
04-02981:
SA2981_1468 (gnd)
08BA02176:
C248_1552 (gnd)
11819-97:
MS7_1528 (gnd)
6850:
RSAU_001377 (gnd)
71193:
ST398NM01_1576
ECT-R 2:
ECTR2_1362 (gnd)
ED133:
SAOV_1512 (gnd)
ED98:
SAAV_1502
HO 5096 0412:
SAEMRSA15_14320 (gnd)
JH1:
SaurJH1_1601
JH9:
SaurJH9_1569
JKD6008:
SAA6008_01480 (gnd)
JKD6159:
SAA6159_01447 (gnd)
LGA251:
SARLGA251_14180 (gnd)
M013:
M013TW_1526
MRSA252:
SAR1589 (gnd)
MSHR1132:
SAMSHR1132_13510
MSSA476:
SAS1450
Mu3:
SAHV_1499 (gnd)
Mu50:
SAV1511 (gnd)
MW2:
MW1464 (gnd)
RF122:
SAB1384c (gnd)
ST398:
SAPIG1576 (gnd)
T0131:
SAT0131_01604 (metB)
TCH60:
HMPREF0772_11629 (gnd)
TW20:
SATW20_15080 (gnd)
USA300_TCH1516:
USA300HOU_1512 (pgd)
VC40:
SAVC_06800

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTQQIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSLEEFV
  N315            MTQQIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSLEEFV
  NCTC8325        MTQQIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSLEEFV
  Newman          MTQQIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSLEEFV
  USA300_FPR3757  MTQQIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPTYSLEEFV
                  ************************************************************
  
  COL             NSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAIN
  N315            NSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAIN
  NCTC8325        NSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAIN
  Newman          NSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAIN
  USA300_FPR3757  NSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAIN
                  ************************************************************
  
  COL             FIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAGHY
  N315            FIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAGHY
  NCTC8325        FIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAGHY
  Newman          FIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAGHY
  USA300_FPR3757  FIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAGHY
                  ************************************************************
  
  COL             VKMVHNGIEYADMQLIAESYAMMKELLGMSHEDIAQTFKDWNAGELESYLIEITGDIFMK
  N315            VKMVHNGIEYADMQLIAESYAMMKELLGMSHEDIAQTFKDWNAGELESYLIEITGDIFMK
  NCTC8325        VKMVHNGIEYADMQLIAESYAMMKELLGMSHEDIAQTFKDWNAGELESYLIEITGDIFMK
  Newman          VKMVHNGIEYADMQLIAESYAMMKELLGMSHEDIAQTFKDWNAGELESYLIEITGDIFMK
  USA300_FPR3757  VKMVHNGIEYADMQLIAESYAMMKELLGMSHEDIAQTFKDWNAGELESYLIEITGDIFMK
                  ************************************************************
  
  COL             LDENKEALVEKILDTAGQKGTGKWTSINALELGIPLTIITESVFARFISSIKEERVNASK
  N315            LDENKEALVEKILDTAGQKGTGKWTSINALELGIPLTIITESVFARFISSIKEERVNASK
  NCTC8325        LDENKEALVEKILDTAGQKGTGKWTSINALELGIPLTIITESVFARFISSIKEERVNASK
  Newman          LDENKEALVEKILDTAGQKGTGKWTSINALELGIPLTIITESVFARFISSIKEERVNASK
  USA300_FPR3757  LDENKEALVEKILDTAGQKGTGKWTSINALELGIPLTIITESVFARFISSIKEERVNASK
                  ************************************************************
  
  COL             ELNGPKASFDGDKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWR
  N315            ELNGPKASFDGDKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWR
  NCTC8325        ELNGPKASFDGDKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWR
  Newman          ELNGPKASFDGDKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWR
  USA300_FPR3757  ELNGPKASFDGDKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWR
                  ************************************************************
  
  COL             EGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGF
  N315            EGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGF
  NCTC8325        EGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGF
  Newman          EGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGF
  USA300_FPR3757  EGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGF
                  ************************************************************
  
  COL             SSSINYYDSYRAADLPANLIQAQRDYFGAHTYERKDKEGVFHTQWIEE
  N315            SSSINYYDSYRAADLPANLIQAQRDYFGAHTYERKDKEGVFHTQWIEE
  NCTC8325        SSSINYYDSYRAADLPANLIQAQRDYFGAHTYERKDKEGVFHTQWIEE
  Newman          SSSINYYDSYRAADLPANLIQAQRDYFGAHTYERKDKEGVFHTQWIEE
  USA300_FPR3757  SSSINYYDSYRAADLPANLIQAQRDYFGAHTYERKDKEGVFHTQWIEE
                  ************************************************