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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004319000
- symbol?: citC
- synonym:
- description?: isocitrate dehydrogenase
- isocitrate dehydrogenase
- isocitrate dehydrogenase (NADP(+))
- isocitrate dehyrogenase
- NADP-dependent isocitrate dehydrogenase
- Isocitrate dehydrogenase (NADP)
- isocitrate dehydrogenase, NADP-dependent
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4560480..4561748
- synteny block?: BlockID0033430
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1653 (citC)
08BA02176:
C248_1736 (citC)
11819-97:
MS7_1701 (icd)
6850:
RSAU_001552 (citC)
71193:
ST398NM01_1748
ECT-R 2:
ECTR2_1534 (icd)
ED133:
SAOV_1682 (citC)
ED98:
SAAV_1684 (icd)
HO 5096 0412:
SAEMRSA15_16040 (citC)
JH1:
SaurJH1_1785
JH9:
SaurJH9_1751
JKD6008:
SAA6008_01661 (citC)
JKD6159:
SAA6159_01618 (citC)
LGA251:
SARLGA251_15860 (citC)
M013:
M013TW_1707
MRSA252:
SAR1773 (citC)
MSHR1132:
SAMSHR1132_15450
MSSA476:
SAS1622
Mu3:
SAHV_1680 (citC)
Mu50:
SAV1694 (citC)
MW2:
MW1638 (citC)
RF122:
SAB1553c (citC)
ST398:
SAPIG1748 (icd)
T0131:
SAT0131_01796
TCH60:
HMPREF0772_11457 (icd)
TW20:
SATW20_16840 (citC)
USA300_TCH1516:
USA300HOU_1681 (icd)
VC40:
SAVC_07675
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEV
N315 MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEV
NCTC8325 MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEV
Newman MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEV
USA300_FPR3757 MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEV
************************************************************
COL LAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRP
N315 LAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRP
NCTC8325 LAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRP
Newman LAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRP
USA300_FPR3757 LAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRP
************************************************************
COL VRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRF
N315 VRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRF
NCTC8325 VRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRF
Newman VRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRF
USA300_FPR3757 VRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRF
************************************************************
COL PETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLAL
N315 PETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLAL
NCTC8325 PETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLAL
Newman PETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLAL
USA300_FPR3757 PETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLAL
************************************************************
COL SEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHD
N315 SEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHD
NCTC8325 SEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHD
Newman SEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHD
USA300_FPR3757 SEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHD
************************************************************
COL VVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSS
N315 VVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSS
NCTC8325 VVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSS
Newman VVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSS
USA300_FPR3757 VVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSS
************************************************************
COL VILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKN
N315 VILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKN
NCTC8325 VILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKN
Newman VILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKN
USA300_FPR3757 VILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKN
************************************************************
COL LK
N315 LK
NCTC8325 LK
Newman LK
USA300_FPR3757 LK
**