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Summary[edit | edit source]

  • pan ID?: SAUPAN004944000
  • symbol?:
  • synonym:
  • description?: DUF2179 domain-containing protein

      descriptions from strain specific annotations:

    • DUF2179 domain-containing protein
    • hypothetical protein with DUF2179
    • Integral membrane protein
    • protein_1892
  • strand?: -
  • coordinates?: 5133003..5133605
  • synteny block?: BlockID0038480
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_1868
    08BA02176:
    C248_1987
    11819-97:
    MS7_1946
    6850:
    RSAU_001798
    71193:
    ST398NM01_2006
    ECT-R 2:
    ECTR2_1783
    ED133:
    SAOV_2014
    ED98:
    SAAV_1978
    HO 5096 0412:
    SAEMRSA15_18210
    JH1:
    SaurJH1_2001
    JH9:
    SaurJH9_1967
    JKD6008:
    SAA6008_01932
    JKD6159:
    SAA6159_01843
    LGA251:
    SARLGA251_17960
    M013:
    M013TW_1948
    MRSA252:
    SAR2004
    MSHR1132:
    SAMSHR1132_17560
    MSSA476:
    SAS1835
    Mu3:
    SAHV_1896
    Mu50:
    SAV1911
    MW2:
    MW1852
    RF122:
    SAB1848c
    ST398:
    SAPIG2006
    T0131:
    SAT0131_02039
    TCH60:
    HMPREF0772_11230
    TW20:
    SATW20_19060
    USA300_TCH1516:
    USA300HOU_1913
    VC40:
    SAVC_08820

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MSFVTENPWLMVLTIFIINVCYVTFLTMRTILTLKGYRYIAASVSFLEVLVYIVGLGLVM
    N315            MSFVTENPWLMVLTIFIINVCYVTFLTMRTILTLKGYRYIAASVSFLEVLVYIVGLGLVM
    NCTC8325        MSFVTENPWLMVLTIFIINVCYVTFLTMRTILTLKGYRYIAASVSFLEVLVYIVGLGLVM
    Newman          MSFVTENPWLMVLTIFIINVCYVTFLTMRTILTLKGYRYIAASVSFLEVLVYIVGLGLVM
    USA300_FPR3757  MSFVTENPWLMVLTIFIINICYVTFLTMRTILTLKGYRYIAASVSFLEVLVYIVGLGLVM
                    *******************:****************************************

    COL             SNLDHIQNIIAYAFGFSIGIIVGMKIEEKLALGYTVVNVTSAEYELDLPNELRNLGYGVT
    N315            SNLDHIQNIIAYAFGFSIGIIVGMKIEEKLALGYTVVNVTSAEYELDLPNELRNLGYGVT
    NCTC8325        SNLDHIQNIIAYAFGFSIGIIVGMKIEEKLALGYTVVNVTSAEYELDLPNELRNLGYGVT
    Newman          SNLDHIQNIIAYAFGFSIGIIVGMKIEEKLALGYTVVNVTSAEYELDLPNELRNLGYGVT
    USA300_FPR3757  SNLDHIQNIIAYAFGFSIGIIVGMKIEEKLALGYTVVNVTSAEYELDLPNELRNLGYGVT
                    ************************************************************

    COL             HYAAFGRDGSRMVMQILTPRKYERKLMDTIKNLDPKAFIIAYEPRNIHGGFWTKGIRRRK
    N315            HYAAFGRDGSRMVMQILTPRKYERKLMDTIKNLDPKAFIIAYEPRNIHGGFWTKGIRRRK
    NCTC8325        HYAAFGRDGSRMVMQILTPRKYERKLMDTIKNLDPKAFIIAYEPRNIHGGFWTKGIRRRK
    Newman          HYAAFGRDGSRMVMQILTPRKYERKLMDTIKNLDPKAFIIAYEPRNIHGGFWTKGIRRRK
    USA300_FPR3757  HYAAFGRDGSRMVMQILTPRKYERKLMDTIKNLDPKAFIIAYEPRNIHGGFWTKGIRRRK
                    ************************************************************

    COL             LKDYEPEELESVVEHEIQSK
    N315            LKDYEPEELESVVEHEIQSK
    NCTC8325        LKDYEPEELESVVEHEIQSK
    Newman          LKDYEPEELESVVEHEIQSK
    USA300_FPR3757  LKDYEPEELESVVEHEIQSK
                    ********************