PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005188000
• symbol^?: int3
• synonym:
• description^?: integrase

  descriptions from strain specific annotations:

  • integrase
  • site-specific integrase
  • phage integrase
  • bacteriophage integrase
  • DNA integration/recombination/inversion protein
  • Integrase, phage associated
  • phage integrase family protein
• strand^?: +
• coordinates^?: 5356471..5357532
• synteny block^?: BlockID0040200
• occurrence^?: in 70% of 33 strains

⊟Orthologs

COL:
—
N315:
SA1810 (int)
NCTC8325:
SAOUHSC_02239
Newman:
NWMN_1925 (int)
USA300_FPR3757:
SAUSA300_1972 (int)
04-02981:
SA2981_1964
08BA02176:
—
11819-97:
MS7_2034
6850:
—
71193:
ST398NM01_0469
ECT-R 2:
ECTR2_1874
ED133:
—
ED98:
SAAV_2070
HO 5096 0412:
SAEMRSA15_19260 (int)
JH1:
SaurJH1_2097
JH9:
SaurJH9_2060
JKD6008:
SAA6008_02056
JKD6159:
SAA6159_01937
LGA251:
—
M013:
—
MRSA252:
SAR2105 (int)
MSHR1132:
SAMSHR1132_18450
MSSA476:
SAS1922
Mu3:
SAHV_1988 (int)
Mu50:
SAV2002 (int)
MW2:
MW1939 (int)
RF122:
—
ST398:
—
T0131:
SAT0131_02138
TCH60:
—
TW20:
SATW20_20000 (int)
USA300_TCH1516:
USA300HOU_2009 (int)
VC40:
—

⊟Genome Viewer

N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  N315            --------MKTRCYDGKKWQYEFKHEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDN
  NCTC8325        --------MKTRCYDGKKWQYEFKHEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDN
  Newman          MPILRRERMKTRCYDGKKWQYEFKHEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDN
  USA300_FPR3757  --------MKTRCYDGKKWQYEFKYEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDN
                          ****************:***********************************
  
  N315            YITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDH
  NCTC8325        YITLAEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDY
  Newman          YITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDY
  USA300_FPR3757  YITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDY
                  **** ******************************************************:
  
  N315            SKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEI
  NCTC8325        SKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEI
  Newman          SKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEI
  USA300_FPR3757  SKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEI
                  ************************************************************
  
  N315            LKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISI
  NCTC8325        LKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISI
  Newman          LKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISI
  USA300_FPR3757  LKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISI
                  ***************************************************:********
  
  N315            AKSDMKHIMDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHT
  NCTC8325        AKSDMKHIMDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHT
  Newman          AKSDMKHIMDVISTFAISYDGYIFKEGGSIINLHAINNALKSACRVNNIPIITSHALRHT
  USA300_FPR3757  AKSDMKHIMDVISTFAISYDGYIFKEAGSIINLHAINNALKSACRVNNISIITSHALRHT
                  **************************.******:***************.**********
  
  N315            HCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILESM
  NCTC8325        HCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILESM
  Newman          HCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILESM
  USA300_FPR3757  HCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILESM
                  *****************************************************