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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005354000
- symbol?: cshA
- synonym:
- description?: DEAD/DEAH box family ATP-dependent RNA helicase
- DEAD/DEAH box family ATP-dependent RNA helicase
- DEAD/DEAH box helicase
- ATP-dependent RNA helicase
- ATP-dependent RNA helicase, DEAD box family, putative
- ATP-dependent RNA helicase DEAD box family protein
- DEAD-box ATP dependent DNA helicase
- Cold-shock DEAD-box protein A
- cold-shock deAd box protein a (atp-dependent rna helicasedead)
- DEAD-box ATP-dependent RNA helicase
- putative helicase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5530151..5531614
- synteny block?: BlockID0041510
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2022
08BA02176:
C248_2092
11819-97:
MS7_2097 (cshA)
6850:
RSAU_001920
71193:
ST398NM01_2122
ECT-R 2:
ECTR2_1937
ED133:
SAOV_2122c
ED98:
SAAV_2135
HO 5096 0412:
SAEMRSA15_19900
JH1:
SaurJH1_2156
JH9:
SaurJH9_2118
JKD6008:
SAA6008_02119
JKD6159:
SAA6159_01995
LGA251:
SARLGA251_18830
M013:
M013TW_2039
MRSA252:
SAR2168
MSHR1132:
SAMSHR1132_19050
MSSA476:
SAS1985
Mu3:
SAHV_2066
Mu50:
SAV2081
MW2:
MW2004
RF122:
SAB1965c
ST398:
SAPIG2122
T0131:
SAT0131_02239 (spsA)
TCH60:
HMPREF0772_11114
TW20:
SATW20_22200
USA300_TCH1516:
USA300HOU_2076
VC40:
SAVC_09285
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL
N315 MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL
NCTC8325 MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL
Newman MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL
USA300_FPR3757 MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL
************************************************************
COL IEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGP
N315 IEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGP
NCTC8325 IEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGP
Newman IEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGP
USA300_FPR3757 IEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGP
************************************************************
COL QIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTML
N315 QIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTML
NCTC8325 QIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTML
Newman QIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTML
USA300_FPR3757 QIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTML
************************************************************
COL FSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQP
N315 FSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQP
NCTC8325 FSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQP
Newman FSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQP
USA300_FPR3757 FSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQP
************************************************************
COL ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVA
N315 ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVA
NCTC8325 ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVA
Newman ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVA
USA300_FPR3757 ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVA
************************************************************
COL ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANG
N315 ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANG
NCTC8325 ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANG
Newman ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANG
USA300_FPR3757 ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANG
************************************************************
COL RKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ
N315 RKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ
NCTC8325 RKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ
Newman RKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ
USA300_FPR3757 RKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYNDVDLVAALLQ
************************************************************
COL ELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKFDSKSKRSKGYSSKKKST
N315 ELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKFDSKSKRSKGYSSKKKST
NCTC8325 ELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKFDSKSKRSKGYSSKKKST
Newman ELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKFDSKSKRSKGYSSKKKST
USA300_FPR3757 ELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKFDSKSKRSKGYSSKKKST
************************************************************
COL KKFDRKEKSSGGSRPMKGRTFADHQK
N315 KKFDRKEKSSGGSRPMKGRTFADHQK
NCTC8325 KKFDRKEKSSGGSRPMKGRTFADHQK
Newman KKFDRKEKSSGGSRPMKGRTFADHQK
USA300_FPR3757 KKFDRKEKSSGGSRPMKGRTFADHQK
**************************