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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005422000
- symbol?: rpoE
- synonym:
- description?: DNA-directed RNA polymerase subunit delta
- DNA-directed RNA polymerase subunit delta
- DNA-directed RNA polymerase, delta subunit
- DNA-directed RNA polymerase delta subunit
- DNA-directed RNA polymerase sigma subunit RpoE
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5582513..5583043
- synteny block?: BlockID0042170
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2068 (rpoE)
08BA02176:
C248_2142 (rpoE)
11819-97:
MS7_2146
6850:
RSAU_001966 (rpoE)
71193:
ST398NM01_2170
ECT-R 2:
ECTR2_1984
ED133:
SAOV_2169c (rpoE)
ED98:
SAAV_2183 (rpoE)
HO 5096 0412:
SAEMRSA15_20360 (rpoE)
JH1:
SaurJH1_2202
JH9:
SaurJH9_2164
JKD6008:
SAA6008_02166 (rpoE)
JKD6159:
SAA6159_02042 (rpoE)
LGA251:
SARLGA251_19290 (rpoE)
M013:
M013TW_2087
MRSA252:
SAR2216 (rpoE)
MSHR1132:
SAMSHR1132_19510
MSSA476:
SAS2031
Mu3:
SAHV_2112 (rpoE)
Mu50:
SAV2128 (rpoE)
MW2:
MW2052 (rpoE)
RF122:
SAB2012c (rpoE)
ST398:
SAPIG2170 (rpoE)
T0131:
SAT0131_02292
TCH60:
HMPREF0772_11062 (rpoE)
TW20:
SATW20_22660 (rpoE)
USA300_TCH1516:
USA300HOU_2116 (rpoE2)
VC40:
SAVC_09515
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKIQDYTKQMVDEKSFIDMAYTLLNDKGETMNLYDIIDEFRALGDYEYEEIENRVVQFYT
N315 MKIQDYTKQMVDEKSFIDMAYTLLNDKGETMNLYDIIDEFRALGDYEYEEIENRVVQFYT
NCTC8325 MKIQDYTKQMVDEKSFIDMAYTLLNDKGETMNLYDIIDEFRALGDYEYEEIENRVVQFYT
Newman MKIQDYTKQMVDEKSFIDMAYTLLNDKGETMNLYDIIDEFRALGDYEYEEIENRVVQFYT
USA300_FPR3757 MKIQDYTKQMVDEKSFIDMAYTLLNDKGETMNLYDIIDEFRALGDYEYEEIENRVVQFYT
************************************************************
COL DLNTDGRFLNVGENLWGLRDWYSVDDIEEKIAPTIQKFDILDADDEEDQNLKLLGEDEMD
N315 DLNTDGRFLNVGENLWGLRDWYSVDDIEEKIAPTIQKFDILDADDEEDQNLKLLGEDEMD
NCTC8325 DLNTDGRFLNVGENLWGLRDWYSVDDIEEKIAPTIQKFDILDADDEEDQNLKLLGEDEMD
Newman DLNTDGRFLNVGENLWGLRDWYSVDDIEEKIAPTIQKFDILDADDEEDQNLKLLGEDEMD
USA300_FPR3757 DLNTDGRFLNVGENLWGLRDWYSVDDIEEKIAPTIQKFDILDADDEEDQNLKLLGEDEMD
************************************************************
COL DDDDIPAQTDDQEELNDPEDEQVEEEINHSDIVIEEDEDELDEDEEVFEDEEDFND
N315 DDDDIPAQTDDQEELNDPEDEQVEEEINHSDIVIEEDEDELDEDEEVFEDEEDFND
NCTC8325 DDDDIPAQTDDQEELNDPEDEQVEEEINHSDIVIEEDEDELDEDEEVFEDEEDFND
Newman DDDDIPAQTDDQEELNDPEDEQVEEEINHSDIVIEEDEDELDEDEEVFEDEEDFND
USA300_FPR3757 DDDDIPAQTDDQEELNDPEDEQVEEEINHSDIVIEEDEDELDEDEEVFEDEEDFND
********************************************************