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Summary[edit | edit source]

  • pan ID?: SAUPAN005700000
  • symbol?: rplW
  • synonym:
  • description?: 50S ribosomal protein L23
  • strand?: -
  • coordinates?: 5809444..5809719
  • synteny block?: BlockID0044460
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    SACOL2237 (rplW)
    N315:
    SA2045 (rplW)
    NCTC8325:
    Newman:
    NWMN_2150 (rplW)
    USA300_FPR3757:
    04-02981:
    SA2981_2186 (rplW)
    08BA02176:
    C248_2284 (rplW)
    11819-97:
    MS7_2268 (rplW)
    6850:
    RSAU_002084 (rplW)
    71193:
    ST398NM01_2301
    ECT-R 2:
    ECTR2_2110
    ED133:
    SAOV_2285c
    ED98:
    SAAV_2310 (rplW)
    HO 5096 0412:
    SAEMRSA15_21470 (rplW)
    JH1:
    SaurJH1_2316 (rplW)
    JH9:
    SaurJH9_2275 (rplW)
    JKD6008:
    SAA6008_02285 (rplW)
    JKD6159:
    SAA6159_02155 (rplW)
    LGA251:
    SARLGA251_20340 (rplW)
    M013:
    M013TW_2207
    MRSA252:
    SAR2333 (rplW)
    MSHR1132:
    SAMSHR1132_20740
    MSSA476:
    SAS2139 (rplW)
    Mu3:
    SAHV_2232 (rplW)
    Mu50:
    SAV2248 (rplW)
    MW2:
    MW2167 (rplW)
    RF122:
    SAB2120c (rplW)
    ST398:
    SAPIG2301 (rplW)
    T0131:
    SAT0131_02421
    TCH60:
    HMPREF0772_10950 (rplW)
    TW20:
    SATW20_23820 (rplW)
    USA300_TCH1516:
    USA300HOU_2810
    VC40:
    SAVC_10110 (rplW)

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MEARDILKRPVITEKSSEAMAEDKYTFDVDTRVNKTQVKMAVEEIFNVKVASVNIMNYKP
    N315            MEARDILKRPVITEKSSEAMAEDKYTFDVDTRVNKTQVKMAVEEIFNVKVASVNIMNYKP
    NCTC8325        MEARDILKRPVITEKSSEAMAEDKYTFDVDTRVNKTQVKMAVEEIFNVKVASVNIMNYKP
    Newman          MEARDILKRPVITEKSSEAMAEDKYTFDVDTRVNKTQVKMAVEEIFNVKVASVNIMNYKP
    USA300_FPR3757  MEARDILKRPVITEKSSEAMAEDKYTFDVDTRVNKTQVKMAVEEIFNVKVASVNIMNYKP
                    ************************************************************

    COL             KKKRMGRYQGYTNKRRKAIVTLKEGSIDLFN
    N315            KKKRMGRYQGYTNKRRKAIVTLKEGSIDLFN
    NCTC8325        KKKRMGRYQGYTNKRRKAIVTLKEGSIDLFN
    Newman          KKKRMGRYQGYTNKRRKAIVTLKEGSIDLFN
    USA300_FPR3757  KKKRMGRYQGYTNKRRKAIVTLKEGSIDLFN
                    *******************************