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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

Summary[edit | edit source]

  • pan ID?: SAUPAN005791000
  • symbol?:
  • synonym:
  • description?: transporter

      descriptions from strain specific annotations:

    • transporter
    • putative transposase
    • pseudogene
  • strand?: +
  • coordinates?: 5878923..5879303
  • synteny block?: BlockID0045360
  • occurrence?: in 36% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    6850:
    RSAU_000900
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    JH1:
    JH9:
    JKD6008:
    SAA6008_02348
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    SAS2205
    Mu3:
    Mu50:
    MW2:
    MW2233
    RF122:
    ST398:
    T0131:
    SAT0131_02493
    TCH60:
    TW20:
    SATW20_24440
    USA300_TCH1516:
    USA300HOU_2295
    VC40:
    SAVC_10425

Genome Viewer[edit | edit source]

COL
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    NCTC8325        MMLKITSYSYTQSEFSGRRIEKLLHNSIRMMWLAQDQTPSYKTINLFRVNPNTDALIESL
    Newman          MMLKITSYSYTQSEFSGRRIEKLLHNSIRMMWLAQDQTPSYKTINLFRVNPNTDALIESL
    USA300_FPR3757  MMLKITSYSYTQSEFSGRRIEKLLHNSIRMMWLAQDQTPSYKTINLFRVNPNTDALIESL
                    ************************************************************

    NCTC8325        FIQFHNKMHIKKADFYQIINRNQLFSLPKNLMSRPLYLRINTYY
    Newman          FIQFHNKMHIKKADFYQIINRNQLFSLPKNLMSRPLYLRINTYY
    USA300_FPR3757  FIQFHNKMHIKKADFYQIINRNQLFSLPKNLMSRPLYLRINTYY
                    ********************************************