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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005852000
- symbol?: emrB
- synonym:
- description?: MFS transporter
- MFS transporter
- EmrB/QacA family drug resistance transporter
- DHA2 family efflux MFS transporter permease subunit
- drug resistance transporter EmrB/QacA subfamily protein
- EmrB/QacA subfamily drug resistance transporter, putative
- multidrug resistance protein B, drug resistance transporter
- drug resistance MFS transporter, drug:H+ antiporter-1 (14 Spanner) (DHA2) family protein
- drug resistance transporter, EmrB/QacA subfamily
- EmrB/QacA subfamily drug resistance transporter
- H+ antiporter-2 family protein
- major facilitator superfamily multidrug:cation symporter
- Membrane component of multidrug resistance system
- MFS family major facilitator multidrug:cation transporter
- multidrug ABC transporter
- multidrug resistance protein
- multidrug resistance transporter
- putative transport protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5928738..5930675
- synteny block?: BlockID0045970
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2291
08BA02176:
C248_2395
11819-97:
MS7_2370
6850:
RSAU_002186
71193:
ST398NM01_2404
ECT-R 2:
ECTR2_2212
ED133:
SAOV_2395c
ED98:
SAAV_2416
HO 5096 0412:
SAEMRSA15_22500
JH1:
SaurJH1_2422
JH9:
SaurJH9_2376
JKD6008:
SAA6008_02389
JKD6159:
SAA6159_02256
LGA251:
SARLGA251_21340
M013:
M013TW_2309
MRSA252:
SAR2437
MSHR1132:
SAMSHR1132_21770
MSSA476:
SAS2243
Mu3:
SAHV_2336
Mu50:
SAV2352
MW2:
MW2273
RF122:
SAB2231c
ST398:
SAPIG2404
T0131:
SAT0131_02539
TCH60:
HMPREF0772_10842
TW20:
SATW20_24830
USA300_TCH1516:
USA300HOU_2333
VC40:
SAVC_10620
⊟Genome Viewer[edit | edit source]
COL | |
N315 | |
NCTC8325 | |
Newman | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTTTFIISYIILALIIVGVINLFLIRSRKKGKRQQKEQQFTTRQSNQSKFKASDLDKTTD
N315 MTTTFIISYIILALIIVGVINLFLIRSRKKGKRQQKEQQFTTRQSNQSKFKASDLDKTTD
NCTC8325 MTTTFIISYIILALIIVGVINLFLIRSRKKGKRQQKEQQFTTRQSNQSKFKASDLDKTTD
Newman MTTTFIISYIILALIIVGVINLFLIRSRKKGKRQQKEQQFTTRQSNQSKFKASDLDKTTD
USA300_FPR3757 MTTTFIISYIILALIIVGVINLFLIRSRKKGKRQQKEQQFTTRQSNQSKFKASDLDKTTD
************************************************************
COL QSTQRMTHEELRVDNQDDHSQVSLNGYTKGSEKDQEAFTNNKDEEAVAAKNPESEEYKVN
N315 QSTQRMTHEELRVDNQDDHSQVSLNGYTKGSEKDQEAFTNNNGEEAVAAKNPESEEYKVN
NCTC8325 QSTQRMTHEELRVDNQDDHSQVSLNGYTKGSEKDQEAFTNNKDEEAVAAKNPESEEYKVN
Newman QSTQRMTHEELRVDNQDDHSQVSLNGYTKGSEKDQEAFTNNKDEEAVAAKNPESEEYKVN
USA300_FPR3757 QSTQRMTHEELRVDNQDDHSQVSLNGYTKGSEKDQEAFTNNKDEEAVAAKNPESEEYKVN
*****************************************:.*****************
COL EKIKKEHKNFIFGEGVSRGKILAALLFGMFIAILNQTLLNVALPKINTEFNISASTGQWL
N315 EKIKKEHKNFIFGEGVSRGKILAALLFGMFIAILNQTLLNVALPKINTEFNISASTGQWL
NCTC8325 EKIKKEHKNFIFGEGVSRGKILAALLFGMFIAILNQTLLNVALPKINTEFNISASTGQWL
Newman EKIKKEHKNFIFGEGVSRGKILAALLFGMFIAILNQTLLNVALPKINTEFNISASTGQWL
USA300_FPR3757 EKIKKEHKNFIFGEGVSRGKILAALLFGMFIAILNQTLLNVALPKINTEFNISASTGQWL
************************************************************
COL MTGFMLVNGILIPITAYLFNKYSYRKLFLVALVLFTIGSLICAISMNFPIMMVGRVLQAI
N315 MTGFMLVNGILIPITAYLFNKYSYRKLFLVALVLFTIGSLICAISMNFPIMMVGRVLQAI
NCTC8325 MTGFMLVNGILIPITAYLFNKYSYRKLFLVALVLFTIGSLICAISMNFPIMMVGRVLQAI
Newman MTGFMLVNGILIPITAYLFNKYSYRKLFLVALVLFTIGSLICAISMNFPIMMVGRVLQAI
USA300_FPR3757 MTGFMLVNGILIPITAYLFNKYSYRKLFLVALVLFTIGSLICAISMNFPIMMVGRVLQAI
************************************************************
COL GAGVLMPLGSIVIITIYPPEKRGAAMGTMGIAMILAPAIGPTLSGYIVQNYHWNVMFYGM
N315 GAGVLMPLGSIVIITIYPPEKRGAAMGTMGIAMILAPAIGPTLSGYIVQNYHWNVMFYGM
NCTC8325 GAGVLMPLGSIVIITIYPPEKRGAAMGTMGIAMILAPAIGPTLSGYIVQNYHWNVMFYGM
Newman GAGVLMPLGSIVIITIYPPEKRGAAMGTMGIAMILAPAIGPTLSGYIVQNYHWNVMFYGM
USA300_FPR3757 GAGVLMPLGSIVIITIYPPEKRGAAMGTMGIAMILAPAIGPTLSGYIVQNYHWNVMFYGM
************************************************************
COL FIIGIIAILIGFVWFKLYQYTTNPKADIPGIIFSTIGFGALLYGFSEAGNKGWGSVEIET
N315 FIIGIIAILVGFVWFKLYQYTTNPKADIPGIIFSTIGFGALLYGFSEAGNKGWGSVEIET
NCTC8325 FIIGIIAILIGFVWFKLYQYTTNPKADIPGIIFSTIGFGALLYGFSEAGNKGWGSVEIET
Newman FIIGIIAILIGFVWFKLYQYTTNPKADIPGIIFSTIGFGALLYGFSEAGNKGWGSVEIET
USA300_FPR3757 FIIGIIAILIGFVWFKLYQYTTNPKADIPGIIFSTIGFGALLYGFSEAGNKGWGSVEIET
*********:**************************************************
COL MFAIGIIFIILFVIRELRMKSPMLNLEVLKFPTFTLTTIINMVVMLSLYGGMILLPIYLQ
N315 MFAIGIIFIILFVIRELRMKSPMLNLEVLKFPTFTLTTIINMVVMLSLYGGMILLPIYLQ
NCTC8325 MFAIGIIFIILFVIRELRMKSPMLNLEVLKFPTFTLTTIINMVVMLSLYGGMILLPIYLQ
Newman MFAIGIIFIILFVIRELRMKSPMLNLEVLKFPTFTLTTIINMVVMLSLYGGMILLPIYLQ
USA300_FPR3757 MFAIGIIFIILFVIRELRMKSPMLNLEVLKFPTFTLTTIINMVVMLSLYGGMILLPIYLQ
************************************************************
COL NLRGFSALDSGLLLLPGSLIMGLLGPFAGKLLDTIGLKPLAIFGIAVMTYATWELTKLNM
N315 NLRGFSALDSGLLLLPGSLIMGLLGPFAGKLLDTIGLKPLAIFGIAVMTYATWELTKLNM
NCTC8325 NLRGFSALDSGLLLLPGSLIMGLLGPFAGKLLDTIGLKPLAIFGIAVMTYATWELTKLNM
Newman NLRGFSALDSGLLLLPGSLIMGLLGPFAGKLLDTIGLKPLAIFGIAVMTYATWELTKLNM
USA300_FPR3757 NLRGFSALDSGLLLLPGSLIMGLLGPFAGKLLDTIGLKPLAIFGIAVMTYATWELTKLNM
************************************************************
COL DTPYMTIMGIYVLRSFGMAFIMMPMVTAAINALPGRLASHGNAFLNTMRQLAGSIGTAIL
N315 DTPYMTIMGIYVLRSFGMAFIMMPMVTAAINALPGRLASHGNAFLNTMRQLAGSIGTAIL
NCTC8325 DTPYMTIMGIYVLRSFGMAFIMMPMVTAAINALPGRLASHGNAFLNTMRQLAGSIGTAIL
Newman DTPYMTIMGIYVLRSFGMAFIMMPMVTAAINALPGRLASHGNAFLNTMRQLAGSIGTAIL
USA300_FPR3757 DTPYMTIMGIYVLRSFGMAFIMMPMVTAAINALPGRLASHGNAFLNTMRQLAGSIGTAIL
************************************************************
COL VTVMTTQTTQHLSAFGEELDKTNPVVQDHMRELASQYGGQEGAMKVLLQFVNKLATVEGI
N315 VTVMTTQTTQHLSAFGEELDKTNPVVQDHMRELASQYGGQEGAMKVLLQFVNKLATVEGI
NCTC8325 VTVMTTQTTQHLSAFGEELDKTNPVVQDHMRELASQYGGQEGAMKVLLQFVNKLATVEGI
Newman VTVMTTQTTQHLSAFGEELDKTNPVVQDHMRELASQYGGQEGAMKVLLQFVNKLATVEGI
USA300_FPR3757 VTVMTTQTTQHLSAFGEELDKTNPVVQDHMHELASQYGGQEGAMKVLLQFVNKLATVEGI
******************************:*****************************
COL NDAFIVATIFSIIALILCLFLQSNKKAKATAQKLDADNSINHE
N315 NDAFIVATIFSIIALILCLFLQSNKKAKATAQKLEASSNNNHE
NCTC8325 NDAFIVATIFSIIALILCLFLQSNKKAKATAQKLDADNSINHE
Newman NDAFIVATIFSIIALILCLFLQSNKKAKATAQKLDADNSINHE
USA300_FPR3757 NDAFIVATIFSIIALILCLFLQSNKKAKATAQKLDADNSINHE
**********************************:*... ***