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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005865000
- symbol?: —
- synonym:
- description?: membrane protein
- membrane protein
- YdcF family protein
- YdcF-like membrane protein, putative
- EpiH/GdmH-like protein
- Integral membrane protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5938424..5939395
- synteny block?: BlockID0046100
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2297
08BA02176:
C248_2403
11819-97:
MS7_2376
6850:
RSAU_002192
71193:
ST398NM01_2411
ECT-R 2:
ECTR2_2218
ED133:
SAOV_2402
ED98:
SAAV_2423
HO 5096 0412:
SAEMRSA15_22560
JH1:
SaurJH1_2428
JH9:
SaurJH9_2382
JKD6008:
SAA6008_02395
JKD6159:
SAA6159_02262
LGA251:
SARLGA251_21400
M013:
M013TW_2316
MRSA252:
SAR2444
MSHR1132:
SAMSHR1132_21830
MSSA476:
SAS2249
Mu3:
SAHV_2342
Mu50:
SAV2358
MW2:
MW2279
RF122:
SAB2237
ST398:
SAPIG2411
T0131:
SAT0131_02545
TCH60:
HMPREF0772_10834
TW20:
SATW20_24890
USA300_TCH1516:
USA300HOU_2340
VC40:
SAVC_10655
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MLLNLLLIFILIVICPLIFNYTLTLNLTCYILVVISIFLSLIYSIMTYTFPWSMFVTFII
N315 MLLNLLLIFILIVICPLIFNYTLTLNLTCYILVVISIFLSLIYSIMTYTFPWSMFVTFII
NCTC8325 MLLNLLLIFILIVICPLIFNYTLTLNLTCYILVVISIFLSLIYSIMTYTFPWSMFVTFII
Newman MLLNLLLIFILIVICPLIFNYTLTLNLTCYILVVISIFLSLIYSIMTYTFPWSMFVTFII
USA300_FPR3757 MLLNLLLIFILIVICPLIFNYTLTLNLTCYILVVISIFLSLIYSIMTYTFPWSMFVTFII
************************************************************
COL ISIIMLFKHRYLFSHTSSRLFIKKLLSFSYKFVLYTSALLFISTIQSPIVKGLSMWLAIL
N315 ISIIMLFKHRYLFSHTSSRLFIKKLLSFSYKFVLYTSALLFISTIQSPIVKGLSMWLAIL
NCTC8325 ISIIMLFKHRYLFSHTSSRLFIKKLLSFSYKFVLYTSALLFISTIQSPIVKGLSMWLAIL
Newman ISIIMLFKHRYLFSHTSSRLFIKKLLSFSYKFVLYTSALLFISTIQSPIVKGLSMWLAIL
USA300_FPR3757 ISIIMLFKHRYLFSHTSSRLFIKKLLSFSYKFVLYTSALLFISTIQSPIVKGLSMWLAIL
************************************************************
COL CLSLLLTFICYLVWTVSYRHRSYNKEVDIIIVLGAGIFTEFVTPMLAARLDRALDIYQQQ
N315 CLSLLLTFICYLVWTVSYRHRSYNKEVDIIIVLGAGIFTEFVTPMLAARLDRALDIYQQQ
NCTC8325 CLSLLLTFICYLVWTVSYRHRSYNKEVDIIIVLGAGIFTEFVTPMLAARLDRALDIYQQQ
Newman CLSLLLTFICYLVWTVSYRHRSYNKEVDIIIVLGAGIFTEFVTPMLAARLDRALDIYQQQ
USA300_FPR3757 CLSLLLTFICYLVWTVSYRHRSYNKEVDIIIVLGAGIFTEFVTPMLAARLDRALDIYQQQ
************************************************************
COL ASATKIIVSGGQGPDEPISEALAMQRYLIAHGVDKTDILMESHSINTYTNFLYSKQIINN
N315 ASATKIIVSGGQGPDEPISEALAMQRYLIAHGVDKTDILMESHSINTYTNFLYSKQIINN
NCTC8325 ASATKIIVSGGQGPDEPISEALAMQRYLIAHGVDKTDILMESHSINTYTNFLYSKQIINN
Newman ASATKIIVSGGQGPDEPISEALAMQRYLIAHGVDKTDILMESHSINTYTNFLYSKQIINN
USA300_FPR3757 ASATKIIVSGGQGPDEPISEALAMQRYLIAHGVDKTDILMESHSINTYTNFLYSKQIINN
************************************************************
COL LYHEAVKIVCVTSQFHVLRALRLAQKLGLSIDGVGSHTPYHFFLHVLIKDYLGVMYQYRL
N315 LYHEAVKIVCVTSQFHVLRALRLAQKLGLSIDGVGSHTPYHFFLHVLIKDYLGVMYQYRL
NCTC8325 LYHEAVKIVCVTSQFHVLRALRLAQKLGLSIDGVGSHTPYHFFLHVLIKDYLGVMYQYRL
Newman LYHEAVKIVCVTSQFHVLRALRLAQKLGLSIDGVGSHTPYHFFLHVLIKDYLGVMYQYRL
USA300_FPR3757 LYHEAVKIVCVTSQFHVLRALRLAQKLGLSIDGVGSHTPYHFFLHVLIKDYLGVMYQYRL
************************************************************
COL LLTLYCSSSWFICLYAAFIYNS
N315 LLTLYCSSSWFICLYAAFIYNS
NCTC8325 LLTLYCSSSWFICLYAAFIYNS
Newman LLTLYCSSSWFICLYAAFIYNS
USA300_FPR3757 LLTLYCSSSWFICLYAAFIYNS
**********************