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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006253000
- symbol?: gbaB
- synonym:
- description?: short-chain dehydrogenase
- short-chain dehydrogenase
- oxidoreductase
- SDR family NAD(P)-dependent oxidoreductase
- short chain dehydrogenase/reductase family oxidoreductase
- short chain dehydrogenase/reductase oxidoreductase
- short chain oxidoreductase, putative
- putative short chain dehydrogenase
- short-chain dehydrogenase/reductase SDR
- short chain dehydrogenase family protein
- short chain oxidoreductase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 6309998..6310717
- synteny block?: BlockID0049760
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2517
08BA02176:
C248_2637
11819-97:
MS7_2585
6850:
RSAU_002419
71193:
ST398NM01_2629
ECT-R 2:
ECTR2_2433
ED133:
SAOV_2623
ED98:
SAAV_2645
HO 5096 0412:
SAEMRSA15_24810
JH1:
SaurJH1_2655
JH9:
SaurJH9_2601
JKD6008:
SAA6008_02617
JKD6159:
SAA6159_02476
LGA251:
SARLGA251_23530
M013:
M013TW_2553
MRSA252:
SAR2659
MSHR1132:
SAMSHR1132_23940
MSSA476:
SAS2465
Mu3:
SAHV_2563
Mu50:
SAV2579
MW2:
MW2499
RF122:
SAB2453
ST398:
SAPIG2629
T0131:
SAT0131_02790
TCH60:
HMPREF0772_10612
TW20:
SATW20_26990
USA300_TCH1516:
USA300HOU_2573
VC40:
SAVC_11770
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTKIVLITGGNKGLGYASAEALKALGYKVYIGSRNDVRGQQASQKLGVHYVQLDVTSDYS
N315 MTKIVLITGGNKGLGYASAEALKALGYKVYIGSRNDVRGQQASQKLGVHYVQLDVTSDYS
NCTC8325 MTKIVLITGGNKGLGYASAEALKALGYKVYIGSRNDVRGQQASQKLGVHYVQLDVTSDYS
Newman MTKIVLITGGNKGLGYASAEALKALGYKVYIGSRNDVRGQQASQKLGVHYVQLDVTSDYS
USA300_FPR3757 MTKIVLITGGNKGLGYASAEALKALGYKVYIGSRNDVRGQQASQKLGVHYVQLDVTSDYS
************************************************************
COL VKNAYNMIAEKEGRLDILINNAGISGQFSAPSKLTPRDVEEVYQTNVFGIVRMMNTFVPL
N315 VKNAYNMIAEKEGRLDILINNAGISGQFSAPSKLTPRDVEEVYQTNVFGIVRMMNTFVPL
NCTC8325 VKNAYNMIAEKEGRLDILINNAGISGQFSAPSKLTPRDVEEVYQTNVFGIVRMMNTFVPL
Newman VKNAYNMIAEKEGRLDILINNAGISGQFSAPSKLTPRDVEEVYQTNVFGIVRMMNTFVPL
USA300_FPR3757 VKNAYNMIAEKEGRLDILINNAGISGQFSAPSKLTPRDVEEVYQTNVFGIVRMMNTFVPL
************************************************************
COL LEKSEQPVVVNVSSGLGSFGMVTNPETAESKVNSLAYCSSKSAVTMLTLQYAKGLPNMQI
N315 LEKSEQPVVVNVSSGLGSFGMVTNPETAESKVNSLAYCSSKSAVTMLTLQYAKGLPNMQI
NCTC8325 LEKSEQPVVVNVSSGLGSFGMVTNPETAESKVNSLAYCSSKSAVTMLTLQYAKGLPNMQI
Newman LEKSEQPVVVNVSSGLGSFGMVTNPETAESKVNSLAYCSSKSAVTMLTLQYAKGLPNMQI
USA300_FPR3757 LEKSEQPVVVNVSSGLGSFGMVTNPETAESKVNSLAYCSSKSAVTMLTLQYAKGLPNMQI
************************************************************
COL NAADPGATNTDLVGDFSNNSKHVSEGIKPIIQLATIGADGPTGTFINGDGEMPW
N315 NAADPGATNTDLVGDFSNNSKHVSEGIKPIIQLATIGADGPTGTFINGDGEMPW
NCTC8325 NAADPGATNTDLVGDFSNNSKHVSEGIKPIIQLATIGADGPTGTFINGDGEMPW
Newman NAADPGATNTDLVGDFSNNSKHVSEGIKPIIQLATIGADGPTGTFINGDGEMPW
USA300_FPR3757 NAADPGATNTDLVGDFSNNSKHVSEGIKPIIQLATIGADGPTGTFINGDGEMPW
******************************************************