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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006413000
- symbol?: icaB
- synonym:
- description?: intercellular adhesion protein B
- intercellular adhesion protein B
- poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase
- intercellular adhesin biosynthesis polysaccharide N-deacetylase
- intercellular adhesion protein B IcaB
- Polysaccharide intercellular adhesin (PIA) biosynthesis deacetylase IcaB
- biofilm PIA synthesis deacetylase IcaB (Intercellular adhesion protein B)
- intercellular adhesion deacetylase IcaB
- polysaccharide deacetylase family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 6462930..6463823
- synteny block?: BlockID0051200
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2607 (icaB)
08BA02176:
C248_2737 (icaB)
11819-97:
MS7_2673 (icaB)
6850:
RSAU_002512 (icaB)
71193:
ST398NM01_2719
ECT-R 2:
ECTR2_2521
ED133:
—
ED98:
SAAV_2740 (icaB)
HO 5096 0412:
SAEMRSA15_25750 (icaB)
JH1:
SaurJH1_2749
JH9:
SaurJH9_2692
JKD6008:
SAA6008_02727 (icaB)
JKD6159:
SAA6159_02564 (icaB)
LGA251:
SARLGA251_24420 (icaB)
M013:
M013TW_2651
MRSA252:
SAR2749 (icaB)
MSHR1132:
SAMSHR1132_24960
MSSA476:
SAS2554
Mu3:
SAHV_2652 (icaB)
Mu50:
SAV2668 (icaB)
MW2:
MW2588 (icaB)
RF122:
SAB2543 (icaB)
ST398:
SAPIG2719
T0131:
SAT0131_02946 (vraE)
TCH60:
HMPREF0772_10518 (icaB)
TW20:
SATW20_28060 (icaB)
USA300_TCH1516:
USA300HOU_2668 (icaB)
VC40:
SAVC_12220
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKYRKFIILVLSILIILPVSTLDGHHIANADDDSPKKLKYKENSALALNYHRVRKANFLN
N315 MKYRKLIILVLSILIILPVSTLDGHHIANADDDSPKKLKYKENSALALNYHRVRKANFLN
NCTC8325 MKYRKFIILVLSILIILPVSTLDGHHIANADDDSPKKLKYKENSALALNYHRVRKANFLN
Newman MKYRKFIILVLSILIILPVSTLDGHHIANADDDSPKKLKYKENSALALNYHRVRKANFLN
USA300_FPR3757 MKYRKFIILVLSILIILPVSTLDGHHIANADDDSPKKLKYKENSALALNYHRVRKANFLN
*****:******************************************************
COL NFIYFFSSSKEIKNYSVSQSQFESQIKWLKSHDAKFLTLKEFLYYKKKGKFPKRSVWINF
N315 NFIYFFSSSKEIKNYSVSQSQFESQIKWLKSHDAKFLTLKEFLYYKKKGKFPKRSVWINF
NCTC8325 NFIYFFSSSKEIKNYSVSQSQFESQIKWLKSHDAKFLTLKEFLYYKKKGKFPKRSVWINF
Newman NFIYFFSSSKEIKNYSVSQSQFESQIKWLKSHDAKFLTLKEFLYYKKKGKFPKRSVWINF
USA300_FPR3757 NFIYFFSSSKEIKNYSVSQSQFESQIKWLKSHDAKFLTLKEFLYYKKKGKFPKRSVWINF
************************************************************
COL DDMDETIYENAYPILKKYKIPATGFIITGHVGEENFHNLDMISKKELKEMYKTGLWEFET
N315 DDMDETIYENAYPILKKYKIPATGFIITGHVGEENFHNLDMISKKELKEMYKTGLWEFET
NCTC8325 DDMDETIYENAYPILKKYKIPATGFIITGHVGEENFHNLDMISKKELKEMYKTGLWEFET
Newman DDMDETIYENAYPILKKYKIPATGFIITGHVGEENFHNLDMISKKELKEMYKTGLWEFET
USA300_FPR3757 DDMDETIYENAYPILKKYKIPATGFIITGHVGEENFHNLDMISKKELKEMYKTGLWEFET
************************************************************
COL HTHDLHNLSKNNKSKLMKASEATIIKDLNKSEKYLTKNFKKSQKTIAYPYGLMNDDKLPV
N315 HTHDLHNLSKNNKSKLMKASEATIIKDLNKSEKYLTKNFKKSQKTIAYPYGLMNDDKLPV
NCTC8325 HTHDLHNLSKNNKSKLMKASEATIIKDLNKSEKYLTKNFKKSQKTIAYPYGLMNDDKLPV
Newman HTHDLHNLSKNNKSKLMKASEATIIKDLNKSEKYLTKNFKKSQKTIAYPYGLMNDDKLPV
USA300_FPR3757 HTHDLHNLSKNNKSKLMKASEATIIKDLNKSEKYLTKNFKKSQKTIAYPYGLMNDDKLPV
************************************************************
COL IKKAGLKYGFSLEEKAVTPNSNDYYIPRILISDDAFEHLIKRWDGFHEKDET
N315 IKKAGLKYGFSLEEKAVTPNSNDYYIPRILISDDAFEHLIKRWDGFHEKD--
NCTC8325 IKKAGLKYGFSLEEKAVTPNSNDYYIPRILISDDAFEHLIKRWDGFHEKD--
Newman IKKAGLKYGFSLEEKAVTPNSNDYYIPRILISDDAFEHLIKRWDGFHEKD--
USA300_FPR3757 IKKAGLKYGFSLEEKAVTPNSNDYYIPRILISDDAFEHLIKRWDGFHEKD--
**************************************************