PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006448000
• symbol^?: —
• synonym:
• description^?: membrane protein
• strand^?: -
• coordinates^?: 6492397..6493164
• synteny block^?: BlockID0051550
• occurrence^?: in 64% of 33 strains

⊟Orthologs

COL:
SACOL2715
N315:
SA2483
NCTC8325:
SAOUHSC_03026
Newman:
NWMN_2589
USA300_FPR3757:
SAUSA300_2624
04-02981:
SA2981_2631
08BA02176:
C248_2755
11819-97:
MS7_2697
6850:
RSAU_002536
71193:
ST398NM01_2737
ECT-R 2:
ECTR2_2544
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
SaurJH1_2772
JH9:
SaurJH9_2715
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
M013TW_2674
MRSA252:
—
MSHR1132:
SAMSHR1132_25200
MSSA476:
—
Mu3:
SAHV_2675
Mu50:
SAV2691
MW2:
—
RF122:
SAB2567c
ST398:
SAPIG2737
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_2693
VC40:
SAVC_12330

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MLSKQSQDFLEKLRVELLFRGKTEAEVEELLEELEDHLTMAEKNNEDTSSIINTPIKSMA
  N315            MLTKQSQDFLEKLRVELLFRGKTEAEVEELLEELEDHLTMAEKNNEDTSSIINTPIKSMA
  NCTC8325        MLSKQSQDFLEKLRVELLFRGKTEAEVEELLEELEDHLTMAEKNNEDTSSIINTPIKSMA
  Newman          MLSKQSQDFLEKLRVELLFRGKTEAEVEELLEELEDHLTMAEKNNEDTSSIINTPIKSMA
  USA300_FPR3757  MLSKQSQDFLEKLRVELLFRGKTEAEVEELLEELEDHLTMAEKNNEDTSSIINTPIKSMA
                  **:*********************************************************
  
  COL             DQLSPEISLTTGLYKYITLYFAFILAVIIIPRFLDLGTFDVTIAFLLYIASIVILGVVIG
  N315            DQLSPEISLTTGLYKYITLYFSFILAVIIIPRFLDLGTFDVTIAFLLYIASIVILGVVIG
  NCTC8325        DQLSPEISLTTGLYKYITLYFAFILAVIIIPRFLDLGTFDVTIAFLLYIASIVILGVVIG
  Newman          DQLSPEISLTTGLYKYITLYFAFILAVIIIPRFLDLGTFDVTIAFLLYIASIVILGVVIG
  USA300_FPR3757  DQLSPEISLTTGLYKYITLYFAFILAVIIIPRFLDLGTFDVTIAFLLYIASIVILGVVIG
                  *********************:**************************************
  
  COL             MLILRNTLVRFGDQKITYVINVTYGIIVFLWMILGGLIIKKYPIYSFFELSDKQSFIVGL
  N315            MLILRNTLVRFGDQKITYVINVTYGIVVFLWMIFGGLIIKKYPIYSFFELSDKQSFIVGL
  NCTC8325        MLILRNTLVRFGDQKITYVINVTYGIIVFLWMILGGLIIKKYPIYSFFELSDKQSFIVGL
  Newman          MLILRNTLVRFGDQKITYVINVTYGIIVFLWMILGGLIIKKYPIYSFFELSDKQSFIVGL
  USA300_FPR3757  MLILRNTLVRFGDQKITYVINVTYGIIVFLWMILGGLIIKKYPIYSFFELSDKQSFIVGL
                  **************************:******:**************************
  
  COL             VLLIALIGTCILIKQKIYALIVLVISLPSLIARIAAIFSKEPDTFNLVSVSILIILNIAF
  N315            VLLIALIVICILIKQKIYALIVLVISLPSLIARIAAIFSKEPDTFNLVSVSILIILNIAF
  NCTC8325        VLLIALIGTCILIKQKIYALIVLVISLPSLIARIAAIFSKEPDTFNLVSVSILIILNIAF
  Newman          VLLIALIGTCILIKQKIYALIVLVISLPSLIARIAAIFSKEPDTFNLVSVSILIILNIAF
  USA300_FPR3757  VLLIALIGTCILIKQKIYALIVLVISLPSLIARIAAIFSKEPDTFNLVSVSILIILNIAF
                  *******  ***************************************************
  
  COL             IIYTFVNFRKLKKED
  N315            IIYTFVNFRKLKKED
  NCTC8325        IIYTFVNFRKLKKED
  Newman          IIYTFVNFRKLKKED
  USA300_FPR3757  IIYTFVNFRKLKKED
                  ***************