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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006457000
- symbol?: rarD
- synonym:
- description?: protein RarD
- protein RarD
- rarD protein
- drug/metabolite permease rarD
- EamA family transporter RarD
- chloramphenicol-sensitive protein
- DMT superfamily drug/metabolite transporter
- DMT superfamily drug/metabolite transporter RarD
- eamA-like transporter family protein
- transporter DMT superfamily protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6502011..6502835
- synteny block?: BlockID0051640
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2635 (rarD)
08BA02176:
C248_2762
11819-97:
MS7_2701
6850:
RSAU_002541 (rarD)
71193:
ST398NM01_2742
ECT-R 2:
ECTR2_2548
ED133:
SAOV_2739c
ED98:
SAAV_2768 (rarD)
HO 5096 0412:
SAEMRSA15_25950
JH1:
SaurJH1_2776
JH9:
SaurJH9_2719
JKD6008:
SAA6008_02753 (rarD)
JKD6159:
SAA6159_02590 (rarD)
LGA251:
SARLGA251_24620
M013:
M013TW_2678
MRSA252:
SAR2776
MSHR1132:
SAMSHR1132_25240
MSSA476:
SAS2580
Mu3:
SAHV_2680
Mu50:
SAV2696
MW2:
MW2615
RF122:
SAB2572c
ST398:
SAPIG2742 (rarD)
T0131:
SAT0131_02973
TCH60:
HMPREF0772_10491 (rarD)
TW20:
SATW20_28310
USA300_TCH1516:
USA300HOU_2697 (rarD)
VC40:
SAVC_12350
⊟Genome Viewer[edit | edit source]
COL | |
N315 | |
NCTC8325 | |
Newman | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNSEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSAIFMIFILAVGQKQR
N315 MNIEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSAIFMIFILAVGQKQR
NCTC8325 MNSEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSAIFMIFILAVGQKQR
Newman MNSEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSAIFMIFILAVGQKQR
USA300_FPR3757 MNSEYKKGIFLALSAYILWGILPIYWQFVDAIGAFEILAFRIIFSAIFMIFILAVGQKQR
** *********************************************************
COL NAFQRDMNQLLGKPIQLLAIVVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILL
N315 NAFQRDMNQLLGKPIQLLAIVVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILL
NCTC8325 NAFQRDMNQLLGKPIQLLAIVVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILL
Newman NAFQRDMNQLLGKPIQLLAIVVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILL
USA300_FPR3757 NAFQRDMNQLLGKPIQLLAIVVAGYVITLNWGTFIWAVTNGHVLQTSLGYYINPLVSILL
************************************************************
COL ALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSIILALSFGTYGLLKKVVHIDAI
N315 ALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSIILALSFGTYGLLKKVVHIDAI
NCTC8325 ALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSIILALSFGTYGLLKKVVHIDAI
Newman ALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSIILALSFGTYGLLKKVVHIDAI
USA300_FPR3757 ALIFLKERFNKFEWLAILFAFIGVLYMTLKIGEFPIVSIILALSFGTYGLLKKVVHIDAI
************************************************************
COL SSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIP
N315 SSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIP
NCTC8325 SSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIP
Newman SSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIP
USA300_FPR3757 SSITIECIVTAPAGLIYVIYLWQQHQMSFGLNMSSFWLLFSGAITAIPLILFSAGAKRIP
************************************************************
COL LSLIGFIQYVGPTIMFVLGIFVFKEPFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAK
N315 LSLIGFIQYVGPTIMFVLGIFVFKEPFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAK
NCTC8325 LSLIGFIQYVGPTIMFVLGIFVFKEPFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAK
Newman LSLIGFIQYVGPTIMFVLGIFVFKEPFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAK
USA300_FPR3757 LSLIGFIQYVGPTIMFVLGIFVFKEPFSIDQLITFIFIWTGIVLYSLSQYIKLKKHPVAK
************************************************************
COL TL
N315 TL
NCTC8325 TL
Newman TL
USA300_FPR3757 TL
**