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NCBI: 10-JUN-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_0677 [new locus tag: SAUSA300_RS03630 ]
  • pan locus tag?: SAUPAN002575000
  • symbol: SAUSA300_0677
  • pan gene symbol?:
  • synonym:
  • product: putative deoxyribodipyrimidine photolyase

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_0677 [new locus tag: SAUSA300_RS03630 ]
  • symbol: SAUSA300_0677
  • product: putative deoxyribodipyrimidine photolyase
  • replicon: chromosome
  • strand: +
  • coordinates: 751174..752547
  • length: 1374
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGGCAATTGCTGTGTTATTAAATCGAATGTTTCGAATGGAACACAATCCATTATTTGAA
    TATATTTATCAACAAAAAGAAGACATTGATGCATGTTATTTTATCATTCCGGAAGAGGAC
    ATGTCTTCAGCTTCTGATTTGAAAGCACAGTTTTATCGCGGTACTTTGCAGCGCTTTTAC
    CAATCGTTGCACGCAGAAAAGCTTACACCTTATGTTATGTCTTATGACGATATCATTTCA
    TTTTGTAAAGAAAACAATATCTCTGAAGTAGTGACTGCGGGTGATATTATGAGTTATCAT
    CTTGAAGAATATGATATTTTACATCAACGTTCTTTATTCAATGAAGCACGCATTGCCGTT
    ACTTTGATACGTGGGAATCATTACTTTAAAGCGAGTAAAACAATGAATCAACAAGGGGAG
    CCATACAATGTTTTTACTAGTTTCTATAAAAAATGGCGACCTTACTTGAGGCATAGAGAC
    GTATATCACTATGATTTAAAATCATTCGAAGACTTTGTCATTGCATCACCTGATGATTTA
    GTGTTTGATGACATAGCATTTGGATCCTCACAAATAATTGAACAGAATAAATGGCAACAT
    TTTTTAGATCAAGATATACAGAATTACGAAAGCGGAAGAGACTATTTACCTGAAGTATTA
    ACAAGTCAGCTAAGTGTTGCTTTAGCATATGGATTATTAGATATTATTGAAATTTTTAAT
    GATTTATTGGCGCGTTATGATGAAGATGAGGCAAACTATGAAGCATTTATACGTGAACTC
    ATTTTTAGAGAATTTTATTATGTGTTAATGACACAGTATCCTGAAACCTCATACCAAGCT
    TTCAAACCTAAATATCGACAGATAAAATGGTCGCAAAATGAAGCGGATTTTAATGCATGG
    TGCGAAGGGCAAACAGGATTTCCAATCATTGATGCAGCAATAATGGAATTGACACAAACT
    GGTTTTATGCATAATCGAATGAGAATGGTTGTGTCGCAATTTTTAACCAAAGATTTATTT
    ATAGATTGGACATGGGGAGAAAAATTCTTTAGAAAGCACCTTATTGACTATGATGCAGCA
    TCAAATATTCATGGATGGCAATGGTCTGCTTCTACAGGTACGGATGCAGTGCCGTATTTT
    AGAATGTTTAATCCAATAAGACAGAGTGAACGCTTTGATGCTAAAGCTTTGTATATCAAA
    ACATATCTTCCGATTTTTAATCAAATTGATGCAAAATATTTGCATGATACACAACGCAAT
    GAGTCCAACCTTTTTGAACAGGGGATTGAATTAGGTAGTCATTATCCAAGACAAATGGTA
    GATCATCAAGAAAAACGTACACAAGTTTTAGCTACATTTAAAGCGCTAGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1374

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SAUSA300_0677 [new locus tag: SAUSA300_RS03630 ]
  • symbol: SAUSA300_0677
  • description: putative deoxyribodipyrimidine photolyase
  • length: 457
  • theoretical pI: 4.9108
  • theoretical MW: 54369.9
  • GRAVY: -0.449015

Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair deoxyribodipyrimidine photo-lyase, 8-HDF type (TIGR03556; EC 4.1.99.3; HMM-score: 249.3)
    and 4 more
    cryptochrome, plant family (TIGR02766; HMM-score: 149.8)
    Cellular processes Cellular processes Adaptations to atypical conditions cryptochrome, DASH family (TIGR02765; HMM-score: 149.2)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair deoxyribodipyrimidine photolyase (TIGR00591; EC 4.1.99.3; HMM-score: 17.7)
    Unknown function Enzymes of unknown specificity putative phosphoesterase (TIGR00024; EC 3.1.-.-; HMM-score: 13.9)
  • TheSEED  :
    • Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
    DNA Metabolism DNA repair DNA repair, bacterial photolyase  Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
  • PFAM:
    no clan defined FAD_binding_7; FAD binding domain of DNA photolyase (PF03441; HMM-score: 250.2)
    and 2 more
    HUP (CL0039) DNA_photolyase; DNA photolyase (PF00875; HMM-score: 44.2)
    Calcineurin (CL0163) Metallophos; Calcineurin-like phosphoesterase (PF00149; HMM-score: 14.5)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001389
    • TAT(Tat/SPI): 0.000095
    • LIPO(Sec/SPII): 0.000339
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSSASDLKAQFYRGTLQRFYQSLHAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQRSLFNEARIAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDLVFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFNDLLARYDEDEANYEAFIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKALD

Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]