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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1478 [new locus tag: SAUSA300_RS08070 ]
  • pan locus tag?: SAUPAN004091000
  • symbol: SAUSA300_1478
  • pan gene symbol?:
  • synonym:
  • product: putative lipoprotein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1478 [new locus tag: SAUSA300_RS08070 ]
  • symbol: SAUSA300_1478
  • product: putative lipoprotein
  • replicon: chromosome
  • strand: -
  • coordinates: 1632071..1632427
  • length: 357
  • essential: unknown

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGAGGCGATGGTTTGTATTAATTTTAGGATTAGTTATATTATTATCTGCATGTGGTCAG
    AAATATGATAAAGAAATTGATGAAGTTACAAAGTTAGAAAAAGAAAGTATTCAAGATGTG
    AAAAATACAAAGAAGTATAAAAATGTTGAGCGGTCAAAAAGTTATTATAAGATTTATAAT
    GATGGTGAGGTTATTATAATGACTTATATGCCTTTTAAAGATAGTAATACAAAAGTTTCA
    AGAGTATATAAAATAAATCAGACTAGCGATAAATATGAAGAAGATTCTAATATTGATGCT
    GAAAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAA
    60
    120
    180
    240
    300
    357

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SAUSA300_1478 [new locus tag: SAUSA300_RS08070 ]
  • symbol: SAUSA300_1478
  • description: putative lipoprotein
  • length: 118
  • theoretical pI: 8.84139
  • theoretical MW: 14098
  • GRAVY: -0.94322

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • hypothetical protein transposon-related
  • PFAM:
    NTF2 (CL0051) DUF4467; Domain of unknown function with cystatin-like fold (DUF4467) (PF14729; HMM-score: 31.5)
    and 2 more
    LppaM (CL0421) LPAM_2; Prokaryotic lipoprotein-attachment site (PF13627; HMM-score: 19.2)
    no clan defined DUF2290; Uncharacterized conserved protein (DUF2290) (PF10053; HMM-score: 15.6)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Lipid anchored
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPII)
    • Intracellular possibility: 0
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: LLSACGQ
  • SignalP: Signal peptide LIPO(Sec/SPII) length 17 aa
    • SP(Sec/SPI): 0.000512
    • TAT(Tat/SPI): 0.0001
    • LIPO(Sec/SPII): 0.999033
    • Cleavage Site: CS pos: 17-18. LSA-CG. Pr: 0.9999
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MRRWFVLILGLVILLSACGQKYDKEIDEVTKLEKESIQDVKNTKKYKNVERSKSYYKIYNDGEVIIMTYMPFKDSNTKVSRVYKINQTSDKYEEDSNIDAEKFEKDNKPVYEENNMKK

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]