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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 23-MAY-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_pUSA010004 [new locus tag: SAUSA300_RS14715 ]
- pan locus tag?:
- symbol: SAUSA300_pUSA010004
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_pUSA010004 [new locus tag: SAUSA300_RS14715 ]
- symbol: SAUSA300_pUSA010004
- product: hypothetical protein
- replicon: pUSA01
- strand: -
- coordinates: 2093..2674
- length: 582
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3912720 NCBI
- RefSeq: YP_492682 NCBI
- BioCyc: GH3C-2677 BioCyc
- MicrobesOnline: 1291475 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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541ATGAATGCAATTCAAAACAGTATATCACTAAGAAAGATTTTAGTAGTATCTTTAAGTATT
TTAACCATACTTTCAATGGTCTTGGATTTTAATTTCAAAGAAGCTCAAGCCCAAAACAAA
AATAACATTGCAGATAAAAACGTTGAAACTTTAAACGAAAAAGAAATTGAAAAAGAACTA
AAATACATATATGGCAAAATTATTATTTTAGATAAAGACGGAACAGCTAAAGATGTTAAT
CTAGAAAATGCCAAATCTCGATATGGATATGTTCCTGAAGGATTCCAAAAACTAAAAAAC
GACATAGAGAATAAAAAGAAAACTAGTTCAATATCACCTAGAGCAGTTGGTGGGAACTAC
AAAAATAGCGGTGACTGTTTCTATTCTGAAGTTTTAAACTCATATGGAGAACTTTTAACT
GGAAACATAATCACAGCAGTTTTTGAAGATGTTAAAGCCAAAAACTTAAAGGGCGTAGCA
AAAAAATTAGCTAAAATTGGGATAAAAGGAAACCTAGCTGGAATCGCAGCTACTATGGTT
TCGAAGGATGTACAATGTAATCTTAAATACGGGTTACTTTAG60
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582
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_pUSA010004 [new locus tag: SAUSA300_RS14715 ]
- symbol: SAUSA300_pUSA010004
- description: hypothetical protein
- length: 193
- theoretical pI: 9.81203
- theoretical MW: 21270.5
- GRAVY: -0.235233
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 3.33
- Cellwall Score: 3.33
- Extracellular Score: 3.33
- Internal Helix: 1
- LocateP: Secretory(released) (with CS)
- Prediction by SwissProt Classification: Extracellular
- Pathway Prediction: Possibly Tat-/Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: 1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: KEAQAQNK
- SignalP: Signal peptide SP(Sec/SPI) length 37 aa
- SP(Sec/SPI): 0.88348
- TAT(Tat/SPI): 0.006725
- LIPO(Sec/SPII): 0.003092
- Cleavage Site: CS pos: 37-38. AQA-QN. Pr: 0.8593
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNAIQNSISLRKILVVSLSILTILSMVLDFNFKEAQAQNKNNIADKNVETLNEKEIEKELKYIYGKIIILDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIENKKKTSSISPRAVGGNYKNSGDCFYSEVLNSYGELLTGNIITAVFEDVKAKNLKGVAKKLAKIGIKGNLAGIAATMVSKDVQCNLKYGLL
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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