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COLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 23-MAY-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_pUSA030010 [new locus tag: SAUSA300_RS14785 ]
  • pan locus tag?:
  • symbol: traA
  • pan gene symbol?:
  • synonym:
  • product: transfer complex protein TraA

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_pUSA030010 [new locus tag: SAUSA300_RS14785 ]
  • symbol: traA
  • product: transfer complex protein TraA
  • replicon: pUSA03
  • strand: +
  • coordinates: 10039..11013
  • length: 975
  • essential: unknown

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    TTGGATAACATAACATTTCGTAAACGTATTGAAGAATATCGAAAGCGATCTATTGAGCAA
    AAGAAATATGAGAGCAAACTAAATTATCAATCAAGATTTGGTGTGAAAGATGATGAAGTT
    AGTACTTTTAATATCAAAGGCATTGCTACAGATAAAAAAGAAAATAAGTTAGTCATGGCC
    GAAGATAGAGAGGATAAACAAAAAGTTCTTTTATACGCCAATAAAGATAATGATATGTAT
    TATTTGAATTCTGGTAGCACTTATAAAGAGGCTGTTCAAAACACTTTTGGTAATGAAACC
    AATTACGAAATGGTAGATGATGAATTATTTATTTATAATTCAAAAAATCAAGCACTTACA
    AACTATGACCAACTTGATGAGTATCACAATCGACAAAAGCAATTACAATATAACACCAAA
    TTAGAACAGGAACGAAAGCAAAGATTGACTGATACAAATAAAGTTAGTGAAAATGCTAAA
    GAAGATTTAGCGTTAAGTTTAGGACTTACAGCAACAGCATTGAAAGGTAACATAAACATT
    TCTAATGTTGAAAAAGTCACTGATAATGAAAGTATGGTTACTATAGAAAATGAAATTAAT
    GGTAAGTCAGAACATTTAATTTCAGACTTTAAAGATAGTTTCATTGAAAAGGCTAAAGAA
    AAGCTAACTGTTTCCCCTTCAATGAGGTTAGGATTTGAAGAATTTAAAAACGCCTCGGGA
    CAAATAGCAATGGGATTTACAGAGTTTTTTGGCGCTAGGTATGACGAAAGCACTTTAGAA
    AACGACCCTAAAGTTGTGGCAACAGAAAAAGGGTACTCTGTTTCTGTTTTTGATAAAGAC
    GGAAACAAAAAAGATTTAACATCAGCTGACACTTTTGAGGAGGCAGTAAAATTATCCAAA
    GAAATGAAACATGATAACTCGCTTTCTCGTAGTGAAATAGAATTAAATCAAGAATTAGAA
    AAGAAAAAAATATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    975

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SAUSA300_pUSA030010 [new locus tag: SAUSA300_RS14785 ]
  • symbol: TraA
  • description: transfer complex protein TraA
  • length: 324
  • theoretical pI: 4.91477
  • theoretical MW: 37481.4
  • GRAVY: -0.988889

Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Plasmid functions integrating conjugative element protein, PFL_4705 family (TIGR03752; HMM-score: 11.8)
  • TheSEED  :
    • Transfer complex protein TraA
  • PFAM:
    Phage_barrel (CL0504) Phage-tail_2; Baseplate structural protein, domain 2 (PF09096; HMM-score: 14.8)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004808
    • TAT(Tat/SPI): 0.000436
    • LIPO(Sec/SPII): 0.001008
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MDNITFRKRIEEYRKRSIEQKKYESKLNYQSRFGVKDDEVSTFNIKGIATDKKENKLVMAEDREDKQKVLLYANKDNDMYYLNSGSTYKEAVQNTFGNETNYEMVDDELFIYNSKNQALTNYDQLDEYHNRQKQLQYNTKLEQERKQRLTDTNKVSENAKEDLALSLGLTATALKGNINISNVEKVTDNESMVTIENEINGKSEHLISDFKDSFIEKAKEKLTVSPSMRLGFEEFKNASGQIAMGFTEFFGARYDESTLENDPKVVATEKGYSVSVFDKDGNKKDLTSADTFEEAVKLSKEMKHDNSLSRSEIELNQELEKKKI

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]