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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS02300 [old locus tag: SA0402 ]
  • pan locus tag?: SAUPAN002144000
  • symbol: SA_RS02300
  • pan gene symbol?:
  • synonym:
  • product: tandem-type lipoprotein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS02300 [old locus tag: SA0402 ]
  • symbol: SA_RS02300
  • product: tandem-type lipoprotein
  • replicon: chromosome
  • strand: +
  • coordinates: 462063..462854
  • length: 792
  • essential: no DEG

Accession numbers[edit | edit source]

  • Location: NC_002745 (462063..462854) NCBI
  • BioCyc: G1G21-443 BioCyc
  • MicrobesOnline: see SA0402

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGGGTTATTTAAAAAGACTTGTATTGTACATAGTTATTATGGTTATGAGTGTTTTTATA
    ATAGGTTGTGATAAATCAAGCGATACTGCAGAAAATCCAAAAGAAGGTTCAAAAGAAGCA
    CAAATTAAAAAGAGTTTTTCGAAAACGTTAGATATGTATCCAATTAAGAATCTCGAGAAT
    CTATATGACAAAGAAGGATATCGTGATGGCGAATTTAAAAAAGGTGATAAAGGGACTTGG
    ACAATATCAACAGATTTTGCTAAAAGCAACAAGCAAGGTGAAATGAATAGCGAAGGTATG
    GTACTACATTTTAATAGAAATACGAGGACAGCAACAGGATATTATACTGTAAGAACAACT
    TATGATGAAGTGGATAAGTTGGCACGCGAAAAAAAATATCGTGTTGAATTTAAAAACAAT
    AAGATAGTTCTATTGGACAAAGTAGAAGATGAAAATCTTAAACAAAAAATAGAAAATTTT
    AAATTTTTCGGGCAATATGCCGATTTTAAAGACTTGAAAAATTATAAAAATGGAAGAATA
    TCTAGCAATGAAAATGTTCCTTATTATGAAGCAGAGTACAAAAGGAATAATAGTGATGGA
    AATGTAAAAAAACTTAGAGAAAAGTACCCAATTACAACCAAGCAGTCTCCAATATTAAAA
    CTGCATATAGACGGCGATATTAAAGGTAGCTCAGTTGGATATAAACAGATAGAATACACA
    TTTTCTAAGGAGAAAGATGATGAGACTTTTATGAGTGATTTTTTGAACTTCGGTCCATCA
    CACAGTAAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    792

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA_RS02300 [old locus tag: SA0402 ]
  • symbol: SA_RS02300
  • description: tandem-type lipoprotein
  • length: 263
  • theoretical pI: 9.50159
  • theoretical MW: 30628.4
  • GRAVY: -0.91635

Function[edit | edit source]

  • TIGRFAM:
    Staphylococcus tandem lipoproteins (TIGR01742; HMM-score: 353)
    and 2 more
    Cell structure Cell envelope Other lipoprotein, tandem type (TIGR04389; HMM-score: 11.1)
    surface glycoprotein signal peptide (TIGR04207; HMM-score: 9.6)
  • TheSEED: see SA0402
  • PFAM:
    LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 355.4)
    and 2 more
    no clan defined PsbI; Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PF02532; HMM-score: 17.1)
    FidL_like; FidL-like putative membrane protein (PF15941; HMM-score: 14.8)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 4.6
    • Cellwall Score: 2.48
    • Extracellular Score: 2.92
    • Internal Helix: 1
  • LocateP:
  • SignalP: Signal peptide LIPO(Sec/SPII) length 22 aa
    • SP(Sec/SPI): 0.000977
    • TAT(Tat/SPI): 0.000054
    • LIPO(Sec/SPII): 0.998751
    • Cleavage Site: CS pos: 22-23. IIG-CD. Pr: 0.9992
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MGYLKRLVLYIVIMVMSVFIIGCDKSSDTAENPKEGSKEAQIKKSFSKTLDMYPIKNLENLYDKEGYRDGEFKKGDKGTWTISTDFAKSNKQGEMNSEGMVLHFNRNTRTATGYYTVRTTYDEVDKLAREKKYRVEFKNNKIVLLDKVEDENLKQKIENFKFFGQYADFKDLKNYKNGRISSNENVPYYEAEYKRNNSDGNVKKLREKYPITTKQSPILKLHIDGDIKGSSVGYKQIEYTFSKEKDDETFMSDFLNFGPSHSK

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]