From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS02680 [old locus tag: SA0465 ]
  • pan locus tag?: SAUPAN002248000
  • symbol: SA_RS02680
  • pan gene symbol?: divIC
  • synonym:
  • product: cell division protein DIVIC

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS02680 [old locus tag: SA0465 ]
  • symbol: SA_RS02680
  • product: cell division protein DIVIC
  • replicon: chromosome
  • strand: +
  • coordinates: 537710..538102
  • length: 393
  • essential: no DEG other strains

Accession numbers[edit | edit source]

  • Location: NC_002745 (537710..538102) NCBI
  • BioCyc: G1G21-520 BioCyc
  • MicrobesOnline: see SA0465

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGAAAAATAAAGTAGAACATATAGAAAATCAGTACACGTCGCAAGAGAACAAGAAAAAA
    CAACGTCAAAAAATGAAAATGCGTGTTGTTCGTAGGCGTATTACAGTATTTGCGGGCGTA
    TTACTTGCGATAATTGTTGTTTTATCAATCTTGCTTGTTGTCCAAAAACATCGCAATGAT
    ATTGATGCACAGGAGCGAAAAGCGAAAGAAGCACAGTTTCAAAAGCAACAAAATGAAGAA
    ATTGCGTTAAAAGAAAAGTTGAATAATCTGAATGACAAAGATTACATTGAAAAAATTGCG
    CGTGATGATTATTACTTAAGCAACAAAGGTGAAGTGATTTTTAGGTTGCCAGAAGACAAA
    GATTCGTCTAGCTCAAAATCTTCGAAAAAATAA
    60
    120
    180
    240
    300
    360
    393

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA_RS02680 [old locus tag: SA0465 ]
  • symbol: SA_RS02680
  • description: cell division protein DIVIC
  • length: 130
  • theoretical pI: 10.4495
  • theoretical MW: 15347.6
  • GRAVY: -0.941538

Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Cell division cell division protein FtsL (TIGR02209; HMM-score: 22)
    and 4 more
    cytochrome c oxidase accessory protein CcoG (TIGR02745; HMM-score: 16.6)
    TIGR03943 family protein (TIGR03943; HMM-score: 13.3)
    Genetic information processing Protein fate Protein folding and stabilization cytochrome c-type biogenesis protein CcmI (TIGR03142; HMM-score: 12.5)
    Metabolism Energy metabolism Electron transport cytochrome c-type biogenesis protein CcmI (TIGR03142; HMM-score: 12.5)
  • TheSEED: see SA0465
  • PFAM:
    FtsL (CL0225) DivIC; Septum formation initiator (PF04977; HMM-score: 66.4)
    and 23 more
    FtsL; Cell division protein FtsL (PF04999; HMM-score: 15.8)
    no clan defined Gemini_AL2; Geminivirus AL2 protein (PF01440; HMM-score: 15.5)
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain (PF14575; HMM-score: 15.2)
    DUF1510; Protein of unknown function (DUF1510) (PF07423; HMM-score: 15)
    SIT; SHP2-interacting transmembrane adaptor protein, SIT (PF15330; HMM-score: 14.8)
    DUF3671; Protein of unknown function (PF12420; HMM-score: 14.5)
    LapA_dom; Lipopolysaccharide assembly protein A domain (PF06305; HMM-score: 13.3)
    Protocadherin; Protocadherin (PF08374; HMM-score: 13.2)
    DUF1191; Protein of unknown function (DUF1191) (PF06697; HMM-score: 13.1)
    Peptidase_MA (CL0126) Peptidase_M50; Peptidase family M50 (PF02163; HMM-score: 12.7)
    no clan defined INSIG; Insulin-induced protein (INSIG) (PF07281; HMM-score: 11.9)
    GPCR_A (CL0192) 7tm_1; 7 transmembrane receptor (rhodopsin family) (PF00001; HMM-score: 10.8)
    Frizzled; Frizzled/Smoothened family membrane region (PF01534; HMM-score: 10.5)
    MFS (CL0015) TLC; TLC ATP/ADP transporter (PF03219; HMM-score: 10.2)
    no clan defined TraG_N; TraG-like protein, N-terminal region (PF07916; HMM-score: 9.8)
    SNARE-fusion (CL0445) Synaptobrevin; Synaptobrevin (PF00957; HMM-score: 9.7)
    GPCR_A (CL0192) SID-1_RNA_chan; dsRNA-gated channel SID-1 (PF13965; HMM-score: 9.1)
    no clan defined Baculo_11_kDa; Baculovirus 11 kDa family (PF06143; HMM-score: 9)
    DUF2500; Protein of unknown function (DUF2500) (PF10694; HMM-score: 8.7)
    O-anti_assembly (CL0499) O-antigen_lig; O-antigen ligase like membrane protein (PF13425; HMM-score: 8.5)
    no clan defined UPF0239; Uncharacterised protein family (UPF0239) (PF06783; HMM-score: 8.2)
    DUF4834; Domain of unknown function (DUF4834) (PF16118; HMM-score: 7.2)
    Oxa1 (CL0376) 60KD_IMP; 60Kd inner membrane protein (PF02096; HMM-score: 6.7)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cellwall
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 0.53
    • Cellwall Score: 8.75
    • Extracellular Score: 0.7
    • Internal Helix: 1
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.017308
    • TAT(Tat/SPI): 0.000593
    • LIPO(Sec/SPII): 0.005031
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MKNKVEHIENQYTSQENKKKQRQKMKMRVVRRRITVFAGVLLAIIVVLSILLVVQKHRNDIDAQERKAKEAQFQKQQNEEIALKEKLNNLNDKDYIEKIARDDYYLSNKGEVIFRLPEDKDSSSSKSSKK

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]