From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS14280 [old locus tag: SA2497 ]
  • pan locus tag?: SAUPAN006482000
  • symbol: SA_RS14280
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS14280 [old locus tag: SA2497 ]
  • symbol: SA_RS14280
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2808106..2808459
  • length: 354
  • essential: no DEG other strains

Accession numbers[edit | edit source]

  • Location: NC_002745 (2808106..2808459) NCBI
  • BioCyc: G1G21-2901 BioCyc
  • MicrobesOnline: see SA2497

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGTTTTCAATTGGAAGTGCAATTCTTCATTTTGTCATTGGTGGTATCGCTGTTGCATTA
    GCTTCAATTATTGCTGATAAGGTAGGTGGTAAGTTAGGAGGTATTATAGCTACTATGCCG
    GCAGTCTTTCTTGCGGCTATTATCGCATTAGCTTTAGATCATCGTGGTACGCAATTAGTG
    GAGATGTCGATGAATCTTAGTACTGGAGCAATTGTCGGTATTCTGTCTTGTATATTAACT
    GTATTTTTGACATCTCTCTATATTAAGCATAAAGGTTATCGGAAAGGCGCAATATTCACA
    GTTGTTTGTTGGTTTGTTATTTCCCTCGCAATATTCAGTATTAGACATTTATAG
    60
    120
    180
    240
    300
    354

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA_RS14280 [old locus tag: SA2497 ]
  • symbol: SA_RS14280
  • description: hypothetical protein
  • length: 117
  • theoretical pI: 10.178
  • theoretical MW: 12330.9
  • GRAVY: 1.2735

Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Unknown substrate MFS transporter, metabolite:H+ symporter (MHS) family protein (TIGR00883; HMM-score: 13.5)
    and 1 more
    oligosaccharyl transferase, archaeosortase A system-associated (TIGR04154; EC 2.4.1.-; HMM-score: 5.4)
  • TheSEED: see SA2497
  • PFAM:
    GlpM-like (CL0420) DUF3147; Protein of unknown function (DUF3147) (PF11345; HMM-score: 153)
    and 4 more
    no clan defined Chromate_transp; Chromate transporter (PF02417; HMM-score: 13.4)
    DUF485; Protein of unknown function, DUF485 (PF04341; HMM-score: 8.9)
    Apoptosis-Inhib (CL0453) BaxI_1; Bax inhibitor 1 like (PF12811; HMM-score: 6.7)
    ABC-2 (CL0181) ABC2_membrane_5; ABC-2 family transporter protein (PF13346; HMM-score: 6.7)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.09323
    • TAT(Tat/SPI): 0.004443
    • LIPO(Sec/SPII): 0.033966
  • predicted transmembrane helices (TMHMM): 4

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MFSIGSAILHFVIGGIAVALASIIADKVGGKLGGIIATMPAVFLAAIIALALDHRGTQLVEMSMNLSTGAIVGILSCILTVFLTSLYIKHKGYRKGAIFTVVCWFVISLAIFSIRHL

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]