Jump to navigation
Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1789 [new locus tag: NWMN_RS10220 ]
- pan locus tag?: SAUPAN001740000
- symbol: NWMN_1789
- pan gene symbol?: —
- synonym:
- product: phage head protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1789 [new locus tag: NWMN_RS10220 ]
- symbol: NWMN_1789
- product: phage head protein
- replicon: chromosome
- strand: -
- coordinates: 2000407..2001381
- length: 975
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 5331076 NCBI
- RefSeq: YP_001332823 NCBI
- BioCyc:
- MicrobesOnline: 3707377 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961ATGGAACAAACACAAAAATTAAAATTAAATTTGCAACATTTTGCAAGTAACAATGTTAAA
CCACAAGTATTTAACCCTGACAATGTAATGATGCACGAAAAGAAAGATGGCACGTTGTTA
AACGACTTTACAACACCTATCTTACAAGAGGTTATGGAAAACTCTAAAATTATGCAATTA
GGTAAGTACGAACCAATGGAAGGTACTGAGAAGAAGTTTACTTTTTGGGCTGATAAACCA
GGTGCTTACTGGGTAGGTGAAGGTCAAAAAATCGAAACATCTAAAGCTACATGGGTTAAT
GCTACTATGAGAGCGTTTAAATTAGGGGTTATCTTACCTGTAACAAAAGAATTTTTGAAT
TACACTTATTCACAATTCTTTGAAGAAATGAAGCCTATGATTGCTGAAGCATTCTATAAA
AAGTTTGATGAAGCGGGTATTTTGAATCAAGGTAACAATCCATTCGGTAAATCAATTGCA
CAATCAATTGAAAAAACTAATAAGGTTATTAAAGGTGACTTCACACAAGATAACATTATT
GATTTAGAGGCATTACTTGAAGATGACGAATTAGAAGCAAATGCGTTTATCTCAAAAACA
CAAAACAGAAGCTTGTTACGTAAAATTGTAGATCCTGAAACTAAGGAACGTATTTATGAC
CGTAACAGTGATACGTTAGATGGTCTACCTGTGGTTAACCTTAAATCAAGCAATTTAAAA
CGCGGTGAATTAATTACTGGTGACTTTGATAAGTTGATTTACGGTATCCCTCAATTAATT
GAATACAAAATCGATGAAACTGCACAATTATCTACAGTTAAAAACGAAGATGGCACACCT
GTAAACTTATTCGAACAAGACATGGTGGCATTGCGTGCAACTATGCATGTAGCGTTACAC
ATCGCTGACGATAAAGCATTCGCTAAATTAGTGCCTGCTGACAAAAAAACAGATTCAGTA
CCAGGAGAAGTTTAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
975
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1789 [new locus tag: NWMN_RS10220 ]
- symbol: NWMN_1789
- description: phage head protein
- length: 324
- theoretical pI: 4.87832
- theoretical MW: 36756.7
- GRAVY: -0.480864
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions phage major capsid protein, HK97 family (TIGR01554; HMM-score: 67.2)
- TheSEED:
- ⊞PFAM: Phage-coat (CL0373) Phage_capsid; Phage capsid family (PF05065; HMM-score: 154.1)and 2 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MEQTQKLKLNLQHFASNNVKPQVFNPDNVMMHEKKDGTLLNDFTTPILQEVMENSKIMQLGKYEPMEGTEKKFTFWADKPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTYSQFFEEMKPMIAEAFYKKFDEAGILNQGNNPFGKSIAQSIEKTNKVIKGDFTQDNIIDLEALLEDDELEANAFISKTQNRSLLRKIVDPETKERIYDRNSDTLDGLPVVNLKSSNLKRGELITGDFDKLIYGIPQLIEYKIDETAQLSTVKNEDGTPVNLFEQDMVALRATMHVALHIADDKAFAKLVPADKKTDSVPGEV
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available