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NCBI: 22-FEB-2026

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: EGJ38_RS09740 [old locus tag: EGJ38_001951 ]
  • pan locus tag?: SAUPAN004952000
  • symbol: EGJ38_RS09740
  • pan gene symbol?: —
  • synonym:
  • product: glycosyl hydrolase family 28-related protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: EGJ38_RS09740 [old locus tag: EGJ38_001951 ]
  • symbol: EGJ38_RS09740
  • product: glycosyl hydrolase family 28-related protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1967017..1968114
  • length: 1098
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NZ_CM129921 (1967017..1968114) NCBI
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGTATATCAATATGAAAGATTATGGGTTAACAGGCATAAACAAAACTAAAGATACTCGA
    GCAATACAACATGCGTTAAATCGTGGAAGATGTAAACCAACGACAGTTTATATACCGAAA
    GGGACGTATGATATTTGCAAACCATTAACGATATATGGCAATACAACACTTTTGTTGGAT
    AATGAAACTATTTTACGCCGATGTCATTCTGGTCCTTTATTAAAAAATGGTCATCGCTTT
    GGTTTTTATCGTGGTTATAATGGACACAGTCATATTCATATTAAAGGCGGCAAGTTTGAT
    ATGAATGGTGTATCGTATCCTTATAACAATACAGCTATGTGCATTGGGCATGCTGAAGAT
    ATTCAATTAATAGGTGTGACCATTAAGAATGTAGTGAGTGGTCATGCAATTGATGCTTGT
    GGGATTAACGGACTCTATATTAAAAGCTGTTCATTTGAAGGATTTATAGACTATAGTGGC
    GAACGCTTTTATTCTGAAGCAATACAATTAGACATTCAAGTACCTGGTGCTTTTCCAAAA
    TTCGGAACGACAGATGGTACGATAACGAAAAATGTCATTATCGAAGATTGTTATTTTGGA
    CCTTCAGAATTGCCCGAAATGGGAAGTTGGAATCGTGCTATTGGCTCACATGCAAGTAGA
    CATAATCGATACTATGAGAATATTCATATTAGAAATAATATATTTGAAGATATACAAGGT
    TATGCATTAACTCCCTTGAAGTATAAAGATGCTTTCATTATTAATAATAAGTTTATTAAC
    TGTGAGGGTGGTATTAGATATTTAGGAGTTAGAGATGGTAAAAATGCAGCAGATGTGATG
    ACAGGAAAAGACTTAGGTTCCCAAGCAGGCATAAATATGAATATAATTGGAAATGAATTT
    AAAGGATCAATGTCTAAAGATGCGATACATGTACGTAATTATAATAATGTTAAACATAAA
    GATGTATTAATCGTTGGGAATACATTCAATAATTCGACTCAATCAATTCATTTAGAAGAT
    ATTGATACAGTGTTTTTAAGTCCTGTTGAAGCGGGTATTCAAGTTACTACAATCAATGTA
    GATGAAATGAAAAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1098


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: EGJ38_RS09740 [old locus tag: EGJ38_001951 ]
  • symbol: EGJ38_RS09740
  • description: glycosyl hydrolase family 28-related protein
  • length: 365
  • theoretical pI: 8.20395
  • theoretical MW: 40699
  • GRAVY: -0.338904

⊟Function[edit | edit source]

  • TIGRFAM:
    parallel beta-helix repeat (TIGR03804; HMM-score: 4.7)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    Pec_lyase-like (CL0268) Pect-lyase_RHGA_epim; Rhamnogalacturonase A/epimerase, pectate lyase-like (PF12708; HMM-score: 43.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0768
    • Cytoplasmic Membrane Score: 0.0003
    • Cell wall & surface Score: 0.0014
    • Extracellular Score: 0.9215
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.109405
    • TAT(Tat/SPI): 0.001009
    • LIPO(Sec/SPII): 0.011996
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000275705 NCBI
  • UniProt:

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MYINMKDYGLTGINKTKDTRAIQHALNRGRCKPTTVYIPKGTYDICKPLTIYGNTTLLLDNETILRRCHSGPLLKNGHRFGFYRGYNGHSHIHIKGGKFDMNGVSYPYNNTAMCIGHAEDIQLIGVTIKNVVSGHAIDACGINGLYIKSCSFEGFIDYSGERFYSEAIQLDIQVPGAFPKFGTTDGTITKNVIIEDCYFGPSELPEMGSWNRAIGSHASRHNRYYENIHIRNNIFEDIQGYALTPLKYKDAFIINNKFINCEGGIRYLGVRDGKNAADVMTGKDLGSQAGINMNIIGNEFKGSMSKDAIHVRNYNNVKHKDVLIVGNTFNNSTQSIHLEDIDTVFLSPVEAGIQVTTINVDEMKK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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