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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000029
  • pan locus tag?: SAUPAN006531000
  • symbol: JSNZ_000029
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000029
  • symbol: JSNZ_000029
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 37359..38276
  • length: 918
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGCAAAAATCAAAGGCTATAAAAGAATTATTTAAAATTCAAGATAATGAAAATAAATTT
    AAAATAATTAAAAATTATGATTTGAAAATTAAAGGGTTTTCAAATATAACGCTTGATTTT
    ATTGAACAAAATGAGAAATATATTTCTAATCAAATTGCTACTACACAAAATATTAAAAAA
    ATTACTAATATTATTAAAAACAATAAAAAAAATGAGCAAAACTTGGATTATTTATTGTCC
    ATTGATAAGATTTCTGAAAAATATAACAAAGATTTTGATGGCTTAATCACTATATTTGAA
    AATGACAAATACGGAGAATTAACTGAAAAAATTATAAGTAATTTCATGATAGATAATTCA
    CCAATTAAATATGAAAATACGAATAAAAACGAGAATAAAGAATCAATTTTAAGGAATATC
    ATACAGTCCCTAGAATCAAAAATCCAAATTAAAGATCAAAAAATTAATGAACTACTCAAT
    TTGAATAAAGAACTAGAAAAAAAAAACAGAAATTGGGAAGACTTAACTGTAAAACTAAAT
    GAAACAATTAAAGTTAAAAATTACGAATTAAAGGAAATTAAGGAAGTTTTACAAAACAAC
    ATAAATGAATTAGAACAATTAAAAGAAAAATCCAACTCAAAAGAAAGTGATTCACTTCCT
    ATTAAAAATAATAATGAAACTGCAATCAATATAATTGGTGCTCCAGGTTTATGGAAATTA
    GAAAGTACTGAAAATATATACTTTTATAACGAAGACGAAATCGATAACTTTATAAGTAAT
    TATAATAATGAAAATTCAAGATTTTATGTTGTAAATTTCGGTGTCACTTCATACTCAGCT
    CGAAAGCTAAAAAAGCAAACACATGCAATTTTTATAAATAATAAAGATGAATATATAAAA
    ATAATAAAAGGAGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    918

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000029
  • symbol: JSNZ_000029
  • description: hypothetical protein
  • length: 305
  • theoretical pI: 8.51384
  • theoretical MW: 35992.5
  • GRAVY: -0.867869

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Fermentation acetolactate synthase, catabolic (TIGR02418; EC 2.2.1.6; HMM-score: 11.2)
  • TheSEED:
  • PFAM:
    no clan defined Fez1; Fez1 (PF06818; HMM-score: 10.2)
    DUF4407; Domain of unknown function (DUF4407) (PF14362; HMM-score: 10.2)
    Synaptonemal_3; Synaptonemal complex central element protein 3 (PF15191; HMM-score: 9.4)
    UBA (CL0214) UBAP-1_UBA2; Ubiquitin-associated protein 1, UBA2 domain (PF21267; HMM-score: 8.6)
    and 1 more
    no clan defined SlyX; SlyX (PF04102; HMM-score: 7.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9117
    • Cytoplasmic Membrane Score: 0.0057
    • Cell wall & surface Score: 0.0045
    • Extracellular Score: 0.078
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008052
    • TAT(Tat/SPI): 0.000228
    • LIPO(Sec/SPII): 0.000655
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MQKSKAIKELFKIQDNENKFKIIKNYDLKIKGFSNITLDFIEQNEKYISNQIATTQNIKKITNIIKNNKKNEQNLDYLLSIDKISEKYNKDFDGLITIFENDKYGELTEKIISNFMIDNSPIKYENTNKNENKESILRNIIQSLESKIQIKDQKINELLNLNKELEKKNRNWEDLTVKLNETIKVKNYELKEIKEVLQNNINELEQLKEKSNSKESDSLPIKNNNETAINIIGAPGLWKLESTENIYFYNEDEIDNFISNYNNENSRFYVVNFGVTSYSARKLKKQTHAIFINNKDEYIKIIKGE

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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