PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

FunGene: 08-OCT-2024

⊟Summary

• organism: Staphylococcus aureus JSNZ
• locus tag: JSNZ_000039
• pan locus tag^?: SAUPAN000852000
• symbol: JSNZ_000039
• pan gene symbol^?: —
• synonym:
• product: TetR/AcrR family transcriptional regulator C-terminal domain-containing protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: JSNZ_000039
• symbol: JSNZ_000039
• product: TetR/AcrR family transcriptional regulator C-terminal domain-containing protein
• replicon: chromosome
• strand: +
• coordinates: 45551..46105
• length: 555
• essential: unknown

⊟Accession numbers

• Gene ID:
• RefSeq:
• BioCyc:
• MicrobesOnline:

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  421
  481
  541
  
  ATGAATGTTGGGGATTTACGTGTTGTTAAAACGAGAGCTAGTATTAAAAAGGCATTTATG
  ACCTTACTTTTTGAAAAAGATTTTGATACTATTTCGATTAAAGAAATTACTGAATTTGCG
  CAAATTGGCAGAAAAACATTTTATCTGCATTATATTGATAAATATGATTTACTAGATCAA
  ATAGTATCGGAAAAATTGATAGAACTTGAGCAAATTTCTGAAGCCAAAAAGAGTCTGGGT
  ATCCAAGAAGGCACACAGTTATGGTTTGAGTTTTTCGAAAATAATAGAACATTTTTTATG
  AAAATTTTTAATATCAACAACGCTTCAAATTATAAGAAAAAACTGCTTCATTTTATTGAA
  GAAGAATTTAAGAAAAAAGTTCCGACACGTGTTGCTACTGAAAAAGGCTTAGACTACGAC
  TTATATATTAATTTTATTAGTAACGGTATTATCGGACTACTAGATATCTATCTAAACAGT
  AGTGAAAATACAGAAGAACAAGAAAAAATAACATTGCAGGTGTCGCGCCTACTATCTTTG
  TACGATTTAATTTAA
  60
  120
  180
  240
  300
  360
  420
  480
  540
  555
  

⊟Protein

⊟General

• locus tag: JSNZ_000039
• symbol: JSNZ_000039
• description: TetR/AcrR family transcriptional regulator C-terminal domain-containing protein
• length: 184
• theoretical pI: 5.41147
• theoretical MW: 21676.8
• GRAVY: -0.228261

⊟Function

• TIGRFAM:
  probable dihydroxyacetone kinase regulator (TIGR02366; HMM-score: 70)
  and 1 more
  Signal transduction Regulatory functions DNA interactions mycofactocin system transcriptional regulator (TIGR03968; HMM-score: 25.9)
• TheSEED:
• PFAM:
  TetR_C (CL0174) TetR_C_8; Transcriptional regulator C-terminal region (PF14278; HMM-score: 40.7)
  and 2 more
  HTH (CL0123) TetR_N; Bacterial regulatory proteins, tetR family (PF00440; HMM-score: 24.5)
  HTH_Tnp_1_2; Helix-turn-helix of insertion element transposase (PF13022; HMM-score: 17.7)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.7249
  • Cytoplasmic Membrane Score: 0.2352
  • Cell wall & surface Score: 0.0015
  • Extracellular Score: 0.0383
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.001244
  • TAT(Tat/SPI): 0.000086
  • LIPO(Sec/SPII): 0.000237
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI:
• RefSeq:
• UniProt:

⊟Protein sequence

• MNVGDLRVVKTRASIKKAFMTLLFEKDFDTISIKEITEFAQIGRKTFYLHYIDKYDLLDQIVSEKLIELEQISEAKKSLGIQEGTQLWFEFFENNRTFFMKIFNINNASNYKKKLLHFIEEEFKKKVPTRVATEKGLDYDLYINFISNGIIGLLDIYLNSSENTEEQEKITLQVSRLLSLYDLI

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You can add further information about the gene and protein here. [edit]

⊟Literature

⊟References

⊟Relevant publications