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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000334
- pan locus tag?: SAUPAN001980000
- symbol: JSNZ_000334
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000334
- symbol: JSNZ_000334
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 365457..367082
- length: 1626
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1621ATGCTTGATGTTCATTTTATATACCCAGGAAAATTACAAAACGCATGCGAATATTTTAAT
TTACCGACCTCAAAAGAAGGATTTGAAGTCACGATGCATGCTTTACGCCCTGAAAATATA
CATAAAATTTATCATGATATGGATAAGACAGAACAAAAATTTATAGAAACACTTATATCT
AATGGTAATCCTGTCACAATTATAAATAAACGCGATGTTAATATTTTAAAGCTAACAAAT
CATCTAGGTTTTGTTTATCAACTTAACGAAGATGAGTTCTTTGTAAATAATTTCTTTTTA
AGATATATCAATTCAGAGGTACTAGATAATGCATATGGTGAATTCGAATCGTTAGATACA
ATAAACCATATGAATTTAAATGAAGAAGTGTTACGTGTAAGACAACATACGCGCTTAAAC
GATGTCACATTAGAACATGCTTTACTGTTAAAAACTAATGACGAGCTAAAAACAATATGC
AAGCAGTATGGTATCAAAGGATTCTCAAATAAAAACAAACAAAATCTTGTTGAATTAATT
ATGACAGCATTTTTCAATAATAATCACATCATTGAACAAGTGTTTTCTAATACTACTCTA
TTTGAGTTTGACATTCTTTCTAGCATACTTGAAAGTGATGCTAACTACCGATTAAACAAT
GAACTAACTAAATTTGAAAAGCTGCAATTAATAAATTTTGATAACTTTTTAACTATTCAT
TTTTATTATTATTACGACTTTGAATATGATTGTCTTATTTTGCCAAATGATGTGCGTAAA
CATATTGAAAATTTCGTGAATCAAGTCGGCAATGGTGATTTTGAGAAAGCTGTAAATCAA
TTTGTTAATGAGCAAACAATTGAGAATAGTTTAGCAGAGTTTAAAAACGCGTTAGAATTA
TCATTTATGGAAGACGAAGTTGACTTAGATATGTTACTTGAAGATGAAGATTTTGGTACA
ACCGATAGCTTAAGAAGTGATGCAATCACTCAATTGATTTCTGAGATTAAGAAAGGATTA
ATAGATAAAAAAGATATTTTACCTCTTCGTATTATACTTGGTTCTGTAAACTTGTATGGT
ATTTTATCAACTAATCATCTACTATATCTTTTACAAATATATCTTTTACAAAGATTTTAT
GACGCTACTTTTAGTAAAGAAGAGTTACAATATAGCTTAGATACTTTAGCTGGTACTGAG
CTATATTATGTTGAAGATGACTTCGTGTTTCATCCTGTGTTATTTGATGTTGTCGAGTCT
GAGGCGTCTGGCATTGATATTTCTGATGATGGATATTATGTACCAGCTTCGGTTGAAGAA
TTAATCTATTATGATAGACATCACTATTTGAAATCTGATCAAGCAATTAAAGAGTTTACC
AGTTATCTACGCAAACAAATCAATATGAAAAATAATATTGAGAAGGAAAAGTATGTGAAC
GAAATTATTATGCTTTTACGTACGATACCTACATCTAAATTGATACAACCAATTATGCAG
TTATTTATAGATAATGCTATCCTTAACAATGTTCAAAACGACGCATTATTGATAGAAAAA
GTAACTCATGCACGTAATCATTTACGTCTATGGTCATTGCAAGGTCATCGTGAAATTCCA
AACTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000334
- symbol: JSNZ_000334
- description: hypothetical protein
- length: 541
- theoretical pI: 4.57899
- theoretical MW: 63468.5
- GRAVY: -0.276155
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM: HeH (CL0306) Rho_N; Rho termination factor, N-terminal domain (PF07498; HMM-score: 20.6)and 4 moreSAP_new25; SAP domain-containing new25 (PF18953; HMM-score: 15.7)no clan defined LssY_C; LssY C-terminus (PF14067; HMM-score: 14)Histone (CL0012) Bromo_TP_like; Histone-fold protein (PF17027; HMM-score: 13.7)HeH (CL0306) SAP; SAP domain (PF02037; HMM-score: 12.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.4525
- Cytoplasmic Membrane Score: 0.4736
- Cell wall & surface Score: 0.0039
- Extracellular Score: 0.07
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005822
- TAT(Tat/SPI): 0.000252
- LIPO(Sec/SPII): 0.00325
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MLDVHFIYPGKLQNACEYFNLPTSKEGFEVTMHALRPENIHKIYHDMDKTEQKFIETLISNGNPVTIINKRDVNILKLTNHLGFVYQLNEDEFFVNNFFLRYINSEVLDNAYGEFESLDTINHMNLNEEVLRVRQHTRLNDVTLEHALLLKTNDELKTICKQYGIKGFSNKNKQNLVELIMTAFFNNNHIIEQVFSNTTLFEFDILSSILESDANYRLNNELTKFEKLQLINFDNFLTIHFYYYYDFEYDCLILPNDVRKHIENFVNQVGNGDFEKAVNQFVNEQTIENSLAEFKNALELSFMEDEVDLDMLLEDEDFGTTDSLRSDAITQLISEIKKGLIDKKDILPLRIILGSVNLYGILSTNHLLYLLQIYLLQRFYDATFSKEELQYSLDTLAGTELYYVEDDFVFHPVLFDVVESEASGIDISDDGYYVPASVEELIYYDRHHYLKSDQAIKEFTSYLRKQINMKNNIEKEKYVNEIIMLLRTIPTSKLIQPIMQLFIDNAILNNVQNDALLIEKVTHARNHLRLWSLQGHREIPN
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]