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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000364
- pan locus tag?: SAUPAN002119000
- symbol: JSNZ_000364
- pan gene symbol?: ssl10
- synonym:
- product: superantigen-like protein SSL10
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000364
- symbol: JSNZ_000364
- product: superantigen-like protein SSL10
- replicon: chromosome
- strand: +
- coordinates: 397527..398210
- length: 684
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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661ATGAAATTTACAGCATTAGCAAAAGCAACATTAGCTTTAGGAATTTTAACAACTGGAACT
TTAACAACAGAGGCTCATTCCAGTCATGCAAAACAAAATCAAGAGTCAGTAAACAAACAT
GACAAGGAAGCATTATACCGATACTACACTGGAAAGACTATGGAAATGAAAAATATTAGT
GCTTTGAAACATGGTAAAAACAACTTACGTTTTAAGTTTAGAGGTATTAAGATTCAAGTT
TTACTGCCTGGAAATGATAAAAGTAAATTTCAACAGCGTAGTTATGAGGGGTTAGATGTG
TTTTTTGTTCAAGAAAAAAGAGATAAGCACGATATATTTTATACTGTTGGTGGTGTAATA
CAGAATAATAAAACATCTGGAGTTGTCAGTGCACCAATATTAAATGTTACAAAGGAAAAA
GGTGAAGATGCTTTTGTGAAAGGGTACCCTTATTATATTAAAAAAGAAAAAATAACATTA
AAAGAGTTAGATTTTAAGTTGAGAAAGCATCTAATCGAAAAATATGGACTTTATAAAACA
ATCTCAAAAGATGGTAGGGTTAAAATTAGCTTGAAAGATGGCAGTTTTTATAACCTTGAT
TTAAGATCTAAATTAAAATTTAAATATATGGGGGAAGTCATAGAAAGCAAACAAATTAAA
GATATTGAAGTTAACTTAAAGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000364
- symbol: JSNZ_000364
- description: superantigen-like protein SSL10
- length: 227
- theoretical pI: 10.3874
- theoretical MW: 26098.1
- GRAVY: -0.592511
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: Ubiquitin (CL0072) Stap_Strp_tox_C; Staphylococcal/Streptococcal toxin, beta-grasp domain (PF02876; HMM-score: 99.6)OB_enterotoxin (CL0658) SSL_OB; Staphylococcal superantigen-like OB-fold domain (PF09199; HMM-score: 94.8)and 1 moreno clan defined Beta-barrel_GLAA-B_I; GLAA-B beta-barrel domain I (PF23763; HMM-score: 12.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0
- Extracellular Score: 10
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.0024
- Cell wall & surface Score: 0.0099
- Extracellular Score: 0.9877
- LocateP:
- SignalP: Signal peptide SP(Sec/SPI) length 30 aa
- SP(Sec/SPI): 0.980909
- TAT(Tat/SPI): 0.00697
- LIPO(Sec/SPII): 0.007742
- Cleavage Site: CS pos: 30-31. SHA-KQ. Pr: 0.6186
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MKFTALAKATLALGILTTGTLTTEAHSSHAKQNQESVNKHDKEALYRYYTGKTMEMKNISALKHGKNNLRFKFRGIKIQVLLPGNDKSKFQQRSYEGLDVFFVQEKRDKHDIFYTVGGVIQNNKTSGVVSAPILNVTKEKGEDAFVKGYPYYIKKEKITLKELDFKLRKHLIEKYGLYKTISKDGRVKISLKDGSFYNLDLRSKLKFKYMGEVIESKQIKDIEVNLK
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
Stefan Monecke, Peter Slickers, Ralf Ehricht
Assignment of Staphylococcus aureus isolates to clonal complexes based on microarray analysis and pattern recognition.
FEMS Immunol Med Microbiol: 2008, 53(2);237-51
[PubMed:18507678] [WorldCat.org] [DOI] (P p)