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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000656
  • pan locus tag?: SAUPAN002572000
  • symbol: JSNZ_000656
  • pan gene symbol?: —
  • synonym:
  • product: aldo/keto reductase family oxidoreductase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000656
  • symbol: JSNZ_000656
  • product: aldo/keto reductase family oxidoreductase
  • replicon: chromosome
  • strand: +
  • coordinates: 689650..690558
  • length: 909
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGGAACAAATAATGATTAATCACTATGTTCATTTTTCTAGGCTTGTACAAGGTTTTTGG
    CGTGCAAATGAATGGAAGATGACTGCGAAAGAGTTAAATTATTTTATAAATGAATTAGTT
    GAACGTGGAATTACAACGATGGATCATGCTGATATTTATGGGGATTATCAATGTGAATCA
    CTGTTTGGTAATGCTTTGGATTTATCACCCGAATTAAGAAATAAAATTCAAATTGTTACG
    AAATGTGGTATCATTTTGCCTTCTAAGCAATTTGATTTTACAAATGGACATCGTTATGAT
    TTGAGTAGTAAGCACATCGTGAAATCTATTGAACAGTCATTAATCAATTTGAATGTAGAT
    TATTTAGATAGTCTACTCATTCATCGTCCTTCACCATTGATGGATCCAGAACAAGTTGCT
    GATGCATTAACTAAACTTGTTAAACAAGGTAAGTTGAAGTCATTCGGGGTGTCGAATTTT
    AATCATTCACAATACCAATTGTTAAATCAATATATTATGAAAGAAAGACTACATATTAGC
    ATCAATCAATTAGAATTATCGCCATATCACGTTGATAGTTTACAAGATGGAACAATGGAT
    TCAATGTATCAACACCATGTTCAAATTATGGCTTGGAGTCCTTTTGCAGGCGGTAAAATT
    TTCGACAAGGAAGATATTAAAGCGCAACGTATTATGAAAGTTGTTCAATCAATAGCTGAC
    AAATATGGTGTGAGTGACACAGCTGTGATGATAGCATGGTTAGTAAAAATACCGCATCGT
    ATCATGCCGATACTTGGAACAAGTCAGTTAAAGCGTATTGATCAAGCAATCGAAGGGCTA
    CAACTTAATTTAGATGATCAGTCGTGGTTTGACATTTACACCGCTATTATCGGACAAGAT
    ATTCCGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    909

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000656
  • symbol: JSNZ_000656
  • description: aldo/keto reductase family oxidoreductase
  • length: 302
  • theoretical pI: 6.51051
  • theoretical MW: 34813.8
  • GRAVY: -0.225828

⊟Function[edit | edit source]

  • reaction:
    EC 1.-.-.-?  ExPASy
  • TIGRFAM:
    voltage-dependent potassium channel beta subunit (TIGR01293; HMM-score: 70)
    and 1 more
    Metabolism Central intermediary metabolism Polyamine biosynthesis carboxynorspermidine decarboxylase (TIGR01047; HMM-score: 13.6)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    TIM_barrel (CL0036) Aldo_ket_red; Aldo/keto reductase family (PF00248; HMM-score: 179.4)
    and 1 more
    YqgF (CL0580) YqgF; Holliday-junction resolvase-like of SPT6 (PF14639; HMM-score: 11.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.987
    • Cytoplasmic Membrane Score: 0.0059
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0071
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005208
    • TAT(Tat/SPI): 0.000211
    • LIPO(Sec/SPII): 0.000612
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MEQIMINHYVHFSRLVQGFWRANEWKMTAKELNYFINELVERGITTMDHADIYGDYQCESLFGNALDLSPELRNKIQIVTKCGIILPSKQFDFTNGHRYDLSSKHIVKSIEQSLINLNVDYLDSLLIHRPSPLMDPEQVADALTKLVKQGKLKSFGVSNFNHSQYQLLNQYIMKERLHISINQLELSPYHVDSLQDGTMDSMYQHHVQIMAWSPFAGGKIFDKEDIKAQRIMKVVQSIADKYGVSDTAVMIAWLVKIPHRIMPILGTSQLKRIDQAIEGLQLNLDDQSWFDIYTAIIGQDIP

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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