PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

FunGene: 08-OCT-2024

⊟Summary

• organism: Staphylococcus aureus JSNZ
• locus tag: JSNZ_000761
• pan locus tag^?: SAUPAN002074000
• symbol: JSNZ_000761
• pan gene symbol^?: —
• synonym:
• product: DUF3102 domain-containing protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: JSNZ_000761
• symbol: JSNZ_000761
• product: DUF3102 domain-containing protein
• replicon: chromosome
• strand: +
• coordinates: 799796..800209
• length: 414
• essential: unknown

⊟Accession numbers

• Gene ID:
• RefSeq:
• BioCyc:
• MicrobesOnline:

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  
  ATTGGTCGTAGATTAAAACATGTGAAAGAAAATGACTTAGCGCATGGGGAATGGTCGAAT
  TGGTTAAAATCAGTGAATTTTAACGACTCACAAGCAAGAAAATTTATAAAAGTATTTAAC
  GAATTTCAAAATCGTTCGACGTCGAACACTTTAGGAGTAGAAGCTCTTTATCAAATAGCA
  ACTCTCCCTGAACCAGAACGCACGAAAGAACACATAACGTCAAATGGTGAAACTAAAACG
  CCAGATGAAATGACGGTTCGAGAATTACGAGAGTTAAAGAAACAACTCAAACAACGAGAT
  GAAGAAAACGCCCGACTCCAATCACAAATGAAAAAAGTACAACTTTCTGAGGAGATAGAG
  AGAAACCAATATAAATATGGGTTAAATAATTATATTTTTACTATAAAATTTTAG
  60
  120
  180
  240
  300
  360
  414
  

⊟Protein

⊟General

• locus tag: JSNZ_000761
• symbol: JSNZ_000761
• description: DUF3102 domain-containing protein
• length: 137
• theoretical pI: 9.88379
• theoretical MW: 16306.3
• GRAVY: -1.09416

⊟Function

• TIGRFAM:
• TheSEED:
• PFAM:
  no clan defined DUF3102; Protein of unknown function (DUF3102) (PF11300; HMM-score: 39.3)
  and 10 more
  CCDC138_cc; Coiled-coil-domain-containing protein 138, coiled-coil (PF21037; HMM-score: 17.8)
  DUF3069; Protein of unknown function (DUF3069) (PF11269; HMM-score: 15.4)
  DUF2390; Protein of unknown function (DUF2390) (PF09523; HMM-score: 13.9)
  HTH (CL0123) WHD_MCM8; MCM8 winged helix domain (PF25051; HMM-score: 13.8)
  no clan defined Ribosomal_L12_N; Ribosomal protein L7/L12 dimerisation domain (PF16320; HMM-score: 12.5)
  Actin_ATPase (CL0108) Hydantoinase_A; Hydantoinase/oxoprolinase (PF01968; HMM-score: 11)
  PH (CL0266) SPT16; FACT complex subunit (SPT16/CDC68) (PF08644; HMM-score: 10.9)
  no clan defined DUF4519; Domain of unknown function (DUF4519) (PF15012; HMM-score: 9.6)
  LMBR1; LMBR1-like membrane protein (PF04791; HMM-score: 9.4)
  HTH (CL0123) CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1 (PF18375; HMM-score: 7.8)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.866
  • Cytoplasmic Membrane Score: 0.0017
  • Cell wall & surface Score: 0.0026
  • Extracellular Score: 0.1297
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.004503
  • TAT(Tat/SPI): 0.001972
  • LIPO(Sec/SPII): 0.000797
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI:
• RefSeq:
• UniProt:

⊟Protein sequence

• MGRRLKHVKENDLAHGEWSNWLKSVNFNDSQARKFIKVFNEFQNRSTSNTLGVEALYQIATLPEPERTKEHITSNGETKTPDEMTVRELRELKKQLKQRDEENARLQSQMKKVQLSEEIERNQYKYGLNNYIFTIKF

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You can add further information about the gene and protein here. [edit]

⊟Literature

⊟References

⊟Relevant publications