PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 01-DEC-2025

⊟Summary

• organism: Staphylococcus aureus JSNZ
• locus tag: EGJ38_000806 [new locus tag: EGJ38_RS04025 ]
• pan locus tag^?: SAUPAN002900000
• symbol: int
• pan gene symbol^?: int
• synonym:
• alternate name: JSNZ_000806
• product: tyrosine-type recombinase/integrase

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: EGJ38_000806 [new locus tag: EGJ38_RS04025 ]
• symbol: int
• product: tyrosine-type recombinase/integrase
• replicon: chromosome
• strand: -
• coordinates: 836678..837727
• length: 1050
• essential: unknown

⊟Accession numbers

• Gene ID:
• RefSeq: MGT2422781 NCBI
• BioCyc:
• MicrobesOnline:

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  421
  481
  541
  601
  661
  721
  781
  841
  901
  961
  1021
  
  ATGCCAGTATATAAGGATGATAATACAGGTAAATGGTATTTTTCCATTAGATATAAAGAT
  GTATACGGTAATAACAAACGTAAGATGCAACGCGGTTTTTCAACTAAGCGTGAAGCTAAG
  AGTGCAGAGGCTATTTTTTTGAATGATGTAAACGAAGGATATAGCGATTCAAAAACATTT
  GATTATGTTTTTCATCACTATTTAGAAAATAGCGATTTGAGACCTAAAACAAAACGACGC
  AAACAAAATGAATATCATAAACACTTTAAAGCTAAGTTCGGGCATATAAAAATGAATAAG
  ATAACACAAAATCAATGCCAAGAGTTTCGTAAATATCTAATAGAGAATGTAGCATCAACA
  AATTCTGCTCGTACAATTTGGTCAGGTTTTAAAGTTGTAATTAATTATGCTAAAAAATAC
  TTTGGATTACGTACAGATCCAACAATATCAATTAAACCTATTCCGCGTGTAAAGCCAAAA
  CCTAAGTTTATGATGCGTGAAGAATTTGAAGAAAGAATCAAAGACATTGAAGAGCAAGAT
  TACAGAGAGTTATTTACATTAATGTTTTATACAGGTTTGAGGATTGGCGAAGCTATGGCG
  CTTGTTTGGACAGACTACAATAAATACAAAAAAGAGATATCCATAAATAAAACAATGGAC
  ATCTCTAATAGAACTATATATCCGAGACCAAAAACAGATAGTTCAGAGGATATTGTTCCT
  TTACCTAAATTCATCAATACAATGTTAACTGAACGACATCAACGTGAAAAAGAGTTAAAC
  AAATATTTTGATGAACGTAGTTATTTTATTTTCGGAGGAATGGCTCCCAAACATTACAGT
  CATGTTCAAAAGAAATTTCAAAAAGCTTTCCCTCATTATAACATTCACGCGTTAAGACAT
  TCTTATGCATCTTATCTTGCAAATAATGGTGTAGATATTTTCGTTTTACAGTCACTCATG
  AGACATGCTCAAATCACTGAAACGATGGGCACTTACAGCCATTTATATACTCAGAAAAAA
  CACGATGCAATAGCCATTTTTGACAAGTAA
  60
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  1050
  

⊟Protein

⊟General

• locus tag: EGJ38_000806 [new locus tag: EGJ38_RS04025 ]
• symbol: Int
• description: tyrosine-type recombinase/integrase
• length: 349
• theoretical pI: 10.1481
• theoretical MW: 41741.5
• GRAVY: -0.840115

⊟Function

• TIGRFAM:
  Genetic information processing DNA metabolism DNA replication, recombination, and repair tyrosine recombinase XerC (TIGR02224; HMM-score: 64.4)
  Genetic information processing DNA metabolism DNA replication, recombination, and repair tyrosine recombinase XerD (TIGR02225; HMM-score: 57.2)
  and 2 more
  Genetic information processing DNA metabolism DNA replication, recombination, and repair integron integrase (TIGR02249; HMM-score: 40.1)
  Genetic information processing Mobile and extrachromosomal element functions Other integron integrase (TIGR02249; HMM-score: 40.1)
• TheSEED:
• PFAM:
  DNA-mend (CL0382) Phage_integrase; Phage integrase family (PF00589; HMM-score: 66.9)
  and 5 more
  MBD-like (CL0081) Arm-DNA-bind_4; Arm DNA-binding domain (PF14657; HMM-score: 51.3)
  l-integrase_N (CL0469) Phage_int_SAM_3; Phage integrase, N-terminal SAM-like domain (PF14659; HMM-score: 42.1)
  Phage_int_SAM_5; Phage integrase SAM-like domain (PF13102; HMM-score: 36.1)
  no clan defined DUF5390; Family of unknown function (DUF5390) (PF17365; HMM-score: 14.9)
  YvbH_ext; YvbH-like oligomerisation region (PF11724; HMM-score: 12)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.9825
  • Cytoplasmic Membrane Score: 0.0016
  • Cell wall & surface Score: 0.0006
  • Extracellular Score: 0.0153
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.011313
  • TAT(Tat/SPI): 0.000431
  • LIPO(Sec/SPII): 0.001886
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI:
• RefSeq: MGT2422781 NCBI
• UniProt:

⊟Protein sequence

• MPVYKDDNTGKWYFSIRYKDVYGNNKRKMQRGFSTKREAKSAEAIFLNDVNEGYSDSKTFDYVFHHYLENSDLRPKTKRRKQNEYHKHFKAKFGHIKMNKITQNQCQEFRKYLIENVASTNSARTIWSGFKVVINYAKKYFGLRTDPTISIKPIPRVKPKPKFMMREEFEERIKDIEEQDYRELFTLMFYTGLRIGEAMALVWTDYNKYKKEISINKTMDISNRTIYPRPKTDSSEDIVPLPKFINTMLTERHQREKELNKYFDERSYFIFGGMAPKHYSHVQKKFQKAFPHYNIHALRHSYASYLANNGVDIFVLQSLMRHAQITETMGTYSHLYTQKKHDAIAIFDK

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You can add further information about the gene and protein here. [edit]

⊟Literature

⊟References

⊟Relevant publications