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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000853
- pan locus tag?: SAUPAN002978000
- symbol: JSNZ_000853
- pan gene symbol?: —
- synonym:
- product: phage major capsid protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000853
- symbol: JSNZ_000853
- product: phage major capsid protein
- replicon: chromosome
- strand: +
- coordinates: 858167..859141
- length: 975
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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961ATGGAACAAACACAAAAATTAAAATTAAATTTGCAACATTTTGCGAGTAACAATGTTAAA
CCGCAAGTATTTAACCCTGATAATGTAATGATGCACGAAAAGAAAGATGGCACGTTGATG
AATGAATTCACAACGCCCATCTTACAAGAGGTTATGGAAAACTCTAAAATTATGCAATTA
GGTAAGTACGAACCAATGGAAGGTACTGAGAAGAAGTTTACTTTTTGGGCTGATAAACCA
GGTGCTTACTGGGTAGGTGAAGGTCAAAAAATCGAAACATCTAAAGCTACATGGGTTAAT
GCTACTATGAGAGCGTTTAAATTAGGGGTTATCTTACCTGTAACAAAAGAGTTTTTGAAT
TACACTTATTCACAATTCTTTGAAGAAATGAAGCCTATGATTGCTGAAGCATTCTATAAA
AAGTTTGATGAAGCGGGTATTTTGAATCAAGGTAACAATCCATTCGGTAAATCAATTGCA
CAATCAATTGAAAAAACTAATAAGGTTATTAAAGGTGACTTCACACAAGATAACATTATT
GATTTAGAGGCATTACTTGAAGATGACGAATTAGAAGCAAATGCGTTTATCTCAAAAACA
CAAAACAGAAGCTTGTTACGTAAAATTGTAGATCCTGAAACGAAAGAACGTATTTATGAC
CGTAACAGTGATACGTTAGATGGTCTACCTGTGGTTAACCTTAAATCAAGCAACTTAAAA
CGTGGTGAGTTAATCACTGGTGATTTCGATAAGTTGATTTACGGTATCCCTCAATTAATT
GAATACAAAATCGATGAAACTGCACAATTATCTACAGTCAAAAATGAAGATGGAACACCT
GTAAACTTGTTTGAACAAGACATGGTGGCATTACGTGCAACTATGCATGTAGCATTGCAT
ATCGCTGATGATAAAGCGTTTGCTAAGTTAGTTCCTGCTGATGCAAAACCATCTTCAAAT
CCAGGAGAAGTTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000853
- symbol: JSNZ_000853
- description: phage major capsid protein
- length: 324
- theoretical pI: 4.8745
- theoretical MW: 36714.6
- GRAVY: -0.487346
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions phage major capsid protein, HK97 family (TIGR01554; HMM-score: 67.4)and 1 moreAmino acid biosynthesis Aromatic amino acid family chorismate mutase (TIGR01791; EC 5.4.99.5; HMM-score: 12.4)
- TheSEED:
- PFAM: Phage-coat (CL0373) Phage_capsid; Phage capsid family (PF05065; HMM-score: 159.2)and 1 moreSH3 (CL0010) LBR_tudor; Lamin-B receptor of TUDOR domain (PF09465; HMM-score: 13.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.5099
- Cytoplasmic Membrane Score: 0.0014
- Cell wall & surface Score: 0.0008
- Extracellular Score: 0.4879
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002957
- TAT(Tat/SPI): 0.000116
- LIPO(Sec/SPII): 0.000316
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MEQTQKLKLNLQHFASNNVKPQVFNPDNVMMHEKKDGTLMNEFTTPILQEVMENSKIMQLGKYEPMEGTEKKFTFWADKPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTYSQFFEEMKPMIAEAFYKKFDEAGILNQGNNPFGKSIAQSIEKTNKVIKGDFTQDNIIDLEALLEDDELEANAFISKTQNRSLLRKIVDPETKERIYDRNSDTLDGLPVVNLKSSNLKRGELITGDFDKLIYGIPQLIEYKIDETAQLSTVKNEDGTPVNLFEQDMVALRATMHVALHIADDKAFAKLVPADAKPSSNPGEV
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_000850 > JSNZ_000851 > JSNZ_000852 > JSNZ_000853 > JSNZ_000854 > JSNZ_000855 > JSNZ_000856 > JSNZ_000857 > JSNZ_000858 > JSNZ_000859
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)