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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000865
- pan locus tag?: SAUPAN002990000
- symbol: JSNZ_000865
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000865
- symbol: JSNZ_000865
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 868600..870510
- length: 1911
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1861ATGGATAACAAATTAATTACAGACTTAAGTAGAGTTTTCGATTACAGATATGTAGATGAA
AATGAGTATAATTTCAAGCTTATTTCAGACATGCTGACTGATTTTAATTTCTCTCTTGAA
TACCATAGAAATAAAGAGGTATTTGCACATAATGGAGAGCAAATAAAGTATGAGCATTTA
AATGTCACAAGTAGCGTCTCTGATTTTTTAACGTATCTAAACGGCCGTTTCAGCAATATG
GTACTAGGTCATAACGGCGACGGTATCAACGAAGTAAAAGACGCGCGTGTTGATAATACT
GGTTATGATCATAAGACATTGCAAGATCGTTTGTATCATGATTATTCAACACTAGATGCT
TTCACTAAAAAGGTTGAGAAAGCTGTAGATGAAAACTATAAAGAATATCGAGCTACAGAA
TACCGATTCGAACCAAAAGAGCAAGAACCGGAATTCATCACAGATTTATCGCCATATACT
AACGCAGTAATGCAATCATTTTGGGTAGACCCTAGAACGAAAATTATTTATATGACGCAA
GCTCGTCCAGGTAATCATTACATGTTATCTAGATTGAAGCCCAACGGACAATTTATTGAT
AGATTGCTTGTTAAAAACGGCGGTCACGGTACACACAATGCGTATAGATACATTGATGGA
GAATTATGGATTTATTCAGCTGTATTGGACAGTAACAAAAACAACAAGTTTGTACGTTTC
CAATATAGAACTGGAGAAATAACTTATGGTAATGAAATGCAAGATGTCATGCCGAATATA
TTTAACGACAGATATACGTCAGCGATTTATAATCCTATAGAAAATTTAATGATTTTCAGA
CGTGAATATAAAGCTTCTGAAAGACAAGCTAAGAATTCATTGAATTTCATTGAAGTAAGA
AGTGCTGACGATATTGATAAAGGTATAGACAAAGTATTGTATCAAATGGATATACCTATG
GAATACACTTCAGATACACAACCTATGCAAGGTATCACTTATGATGCAGGTATCTTATAT
TGGTATACAGGTGATTCGAATACAGCCAACCCTAACTACTTACAAGGTTTCGATATAAAA
ACAAAAGAATTGTTATTTAAACGACGTATCGATATAGGCGGTGTGAATAACAACTTTAAA
GGAGATTTCCAAGAGGCTGAGGGTCTAGATATGTATTACGATCTAGAAACAGGACGTAAA
GCACTTTTAATCGGGGTAACTATTGGACCAGGTAACAACAGACATCACTCAATTTATTCT
ATCGGCCAAAGAGGTGTTAACCAATTCTTGAAAAACATCGCGCCTCAAGTATCAATGACT
GATTCAGGCGGACGTGTTAAACCGTTACCAATACAGAACCCAGCATATCTAAGTGATATT
ACGGAAGTTGGTCATTACTATATCTATACGCAAGACACACAAAATGCGTTAGATTTCCCG
TTACCGAAAGCGTTTAGAGATGCAGGTTGGTTCTTTGATGTACTGCCTGGACACTATAAT
GGTGCTCTAAGACAAGTACTTACCAGAAACAGCACAGGTAGAAATATGCTTAAATTTGAA
CGTGTCATTGACATTTTCAATAAGAAAAACAACGGAGCATGGAATTTCTGTCCGCAAAAC
GCCGGTTATTGGGAACATATCCCTAAGAGTATTACAAAATTATCAGATTTAAAAATCGTT
GGTTTAGATTTCTATATCACTACTGAAGAATCAAAACGATTTACTGATTTTCCTAAAGAC
TTTAAAGGTATTGCAGGTTGGATATTAGAAGTAAAATCGAATACACCAGGTAACACAACA
CAAGTGCTAAGACGTAATAACTTTGCTTCTGCTCACCAGTTTTTCGTTAGAAACTTTGGT
ACTGGTGGTAATAGTGGTTGGAGCATAATAGAAGGTAAGGAGGTTGAATAA60
120
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1911
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000865
- symbol: JSNZ_000865
- description: hypothetical protein
- length: 636
- theoretical pI: 6.47094
- theoretical MW: 73627.9
- GRAVY: -0.642138
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM: B_Fructosidase (CL0143) Phage_RBD_prop; Phage 5-bladed beta propeller receptor binding platform domain (PF21311; HMM-score: 394.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.1358
- Cytoplasmic Membrane Score: 0.0144
- Cell wall & surface Score: 0.0179
- Extracellular Score: 0.832
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003413
- TAT(Tat/SPI): 0.000097
- LIPO(Sec/SPII): 0.000235
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MDNKLITDLSRVFDYRYVDENEYNFKLISDMLTDFNFSLEYHRNKEVFAHNGEQIKYEHLNVTSSVSDFLTYLNGRFSNMVLGHNGDGINEVKDARVDNTGYDHKTLQDRLYHDYSTLDAFTKKVEKAVDENYKEYRATEYRFEPKEQEPEFITDLSPYTNAVMQSFWVDPRTKIIYMTQARPGNHYMLSRLKPNGQFIDRLLVKNGGHGTHNAYRYIDGELWIYSAVLDSNKNNKFVRFQYRTGEITYGNEMQDVMPNIFNDRYTSAIYNPIENLMIFRREYKASERQAKNSLNFIEVRSADDIDKGIDKVLYQMDIPMEYTSDTQPMQGITYDAGILYWYTGDSNTANPNYLQGFDIKTKELLFKRRIDIGGVNNNFKGDFQEAEGLDMYYDLETGRKALLIGVTIGPGNNRHHSIYSIGQRGVNQFLKNIAPQVSMTDSGGRVKPLPIQNPAYLSDITEVGHYYIYTQDTQNALDFPLPKAFRDAGWFFDVLPGHYNGALRQVLTRNSTGRNMLKFERVIDIFNKKNNGAWNFCPQNAGYWEHIPKSITKLSDLKIVGLDFYITTEESKRFTDFPKDFKGIAGWILEVKSNTPGNTTQVLRRNNFASAHQFFVRNFGTGGNSGWSIIEGKEVE
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_000860 > JSNZ_000861 > JSNZ_000862 > JSNZ_000863 > JSNZ_000864 > JSNZ_000865 > JSNZ_000866 > JSNZ_000867 > JSNZ_000868 > JSNZ_000869
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)