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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000922
  • pan locus tag?: SAUPAN003065000
  • symbol: JSNZ_000922
  • pan gene symbol?: glpQ
  • synonym:
  • product: glycerophosphodiester phosphodiesterase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000922
  • symbol: JSNZ_000922
  • product: glycerophosphodiester phosphodiesterase
  • replicon: chromosome
  • strand: -
  • coordinates: 918842..919771
  • length: 930
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGACTAACTCTTCGAAAAGCTTCACTAAATTTATGGCTGCTTCTGCTGTTTTTACTATG
    GGATTTTTATCAGTACCTACTGCTGGCGCTGAACAAACAAATCAAATTGCAAATAAACCT
    CAGGCTATTCAATGGCATACAAATTTAACGAATGAGCGATTCACTACTATCGCTCATCGT
    GGCGCAAGTGGCTATGCACCCGAGCATACGTTTCAAGCATATGATAAGAGTCATAATGAG
    TTAAAAGCATCGTATATCGAAATTGATTTACAACGTACCAAAGATGGCCATTTAGTTGCT
    ATGCATGATGAAACTGTTAACCGTACAACAAATGGACACGGTAAAGTTGAGGATTATACC
    CTTGATGAATTAAAACAGTTAGATGCAGGAAGTTGGTTTAATAAAAAATATCCAAAATAC
    GCAAGAGCAAGTTATAAAAATGCTAAAGTACCCACTTTAGATGAAATTTTAGAACGTTAT
    GGTCCGAATGCAAACTATTATATTGAAACAAAGTCACCTGATGTATACCCAGGAATGGAA
    GAACAATTATTAGCTTCATTGAAAAAGCATCACCTTTTAAATAACAATAAATTTAAAAAT
    GGACATGTAATGATTCAATCATTTTCTGACGAAAGTTTAAAGAAAATTCATCGTCAAAAT
    AAGAATGTGCCATTAGTAAAATTAGTTGATAAAGGTGAACTACAACAATTTAACGACCAA
    CGCTTAAAAGAGATACGCTCTTATGCGATTGGATTAGGTCCAGATTATACAGATTTAACT
    GAACAAAATACCCATCATTTAAAAGACTTAGGATTTATAGTACATCCTTATACAGTGAAT
    GAACAAGCTGATATGTTACGATTAAATAAATATGGCGTTGATGGTGTCTTTACAAATTTC
    GCTGATAAATATAAAGAAGTAATTAAGTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    930

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000922
  • symbol: JSNZ_000922
  • description: glycerophosphodiester phosphodiesterase
  • length: 309
  • theoretical pI: 8.92153
  • theoretical MW: 35321.5
  • GRAVY: -0.733981

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    TIM_barrel (CL0036) GDPD; Glycerophosphoryl diester phosphodiesterase family (PF03009; HMM-score: 176.2)
    and 1 more
    HeH (CL0306) DUF7722; Domain of unknown function (DUF7722) (PF24847; HMM-score: 16.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.3
    • Cellwall Score: 4.55
    • Extracellular Score: 5.15
    • Internal Helices: 0
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0016
    • Cytoplasmic Membrane Score: 0.0041
    • Cell wall & surface Score: 0.0095
    • Extracellular Score: 0.9848
  • LocateP:
  • SignalP: Signal peptide SP(Sec/SPI) length 30 aa
    • SP(Sec/SPI): 0.828547
    • TAT(Tat/SPI): 0.163998
    • LIPO(Sec/SPII): 0.002972
    • Cleavage Site: CS pos: 30-31. AGA-EQ. Pr: 0.8839
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MTNSSKSFTKFMAASAVFTMGFLSVPTAGAEQTNQIANKPQAIQWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNRTTNGHGKVEDYTLDELKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKFKNGHVMIQSFSDESLKKIHRQNKNVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHPYTVNEQADMLRLNKYGVDGVFTNFADKYKEVIK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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