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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_001287
- pan locus tag?: SAUPAN003227000
- symbol: JSNZ_001287
- pan gene symbol?: —
- synonym:
- product: ATP-binding protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_001287
- symbol: JSNZ_001287
- product: ATP-binding protein
- replicon: chromosome
- strand: -
- coordinates: 1303670..1304089
- length: 420
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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301
361ATAAATATTTGTTTCTTAGATAACCGTGTTGTTGGTAAAACACACCTAACAATCTCATTA
GGAATTGAGGCATGTAAACAAAATATAAAGACTAGTTTCTATACTTTCAAAGAATTAATA
GACTTATTAACTGTCACAGATTCCAAAGAAATCATTAATAAAACATTAAAACAATTAAGC
AGAATAGAGTTACTTATCATTGATGAAATTTGTTATTCTGCCATCACCAAAGAACAAGCT
GATTTATTCTACCAGTTAATGTCACTAAAATATGAAATGAAATCAACAATAATTACGACT
AATATTACATTTTCGAGTTGGGGAGAGTCATTTAGTAATAAGATTGTATCAGCAGCTATA
ATTGATCGGTTAGTTCACCATTCAAAAGTATTTAAAATTACTGAGAATCATATCGATTAA60
120
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420
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_001287
- symbol: JSNZ_001287
- description: ATP-binding protein
- length: 139
- theoretical pI: 7.50402
- theoretical MW: 15967.5
- GRAVY: 0.0856115
⊟Function[edit | edit source]
- TIGRFAM: DNA metabolism DNA replication, recombination, and repair chromosomal replication initiator protein DnaA (TIGR00362; HMM-score: 20.3)and 1 moreDNA metabolism DNA replication, recombination, and repair DnaA regulatory inactivator Hda (TIGR03420; HMM-score: 14.1)
- TheSEED:
- PFAM: P-loop_NTPase (CL0023) IstB_IS21; IstB-like ATP binding protein (PF01695; HMM-score: 128.4)and 3 moreBac_DnaA; Bacterial DnaA ATPAse domain (PF00308; HMM-score: 21.6)no clan defined Pox_D3; Chordopoxvirinae D3 protein (PF04580; HMM-score: 15)TPR (CL0020) PPR_3; Pentatricopeptide repeat domain (PF13812; HMM-score: 13.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9653
- Cytoplasmic Membrane Score: 0.0281
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.0065
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003438
- TAT(Tat/SPI): 0.000298
- LIPO(Sec/SPII): 0.243516
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MNICFLDNRVVGKTHLTISLGIEACKQNIKTSFYTFKELIDLLTVTDSKEIINKTLKQLSRIELLIIDEICYSAITKEQADLFYQLMSLKYEMKSTIITTNITFSSWGESFSNKIVSAAIIDRLVHHSKVFKITENHID
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_001287 < JSNZ_001288
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)