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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001775
  • pan locus tag?: SAUPAN004499000
  • symbol: JSNZ_001775
  • pan gene symbol?: —
  • synonym:
  • product: aldo/keto reductase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001775
  • symbol: JSNZ_001775
  • product: aldo/keto reductase
  • replicon: chromosome
  • strand: -
  • coordinates: 1826950..1827783
  • length: 834
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGGAGGTTAAAACATTTTATAATGGAAACACGATGCCACAAATTGGTTTAGGGACATTT
    CGTGTGGAAAATGATGAAAATTGCATGGAAAGTGTTAAGTATGCCATTGAACAAGGATAT
    CGTAGTATTGATACCGCAAAAGTTTATGGGAATGAAGAACAAGTAGGTGCTGGCATTCGT
    GCCGGATTGGAGTCAACTGGTATTGCTAGAGAAGACTTATTTATTACTTCAAAATTATAT
    TTTGAGGATTTCGGTCGTGAAAATGTAGCAGCTGCTTACGAAGCTAGTTTATCTAGATTA
    GGTTTAAAATACTTAGATTTGTATCTAGTACATTGGCCAGGCACGAACGAAGCCGTAATG
    GTTGATACATGGAAAGGTATGGAAGATTTATATAAAAATAATAAAGTTAAAAATATAGGT
    GTCAGCAATTTTGAACCTGAACATTTGGAAGCTTTGTTGGCACAAGTGTCAATTAAACCT
    GTAATTAATCAAGTTGAATATCATCCATATTTAACGCAACATAAATTGAAATTATATTTG
    GCAGCACAACATATCGTGATGGAATCTTGGTCACCATTGATGAATGCACAAATTTTAAAT
    GATGAGACAATTAAAGACATTGCTCAAGAATTAGGAAAGTCACCTGCCCAAGTTGTTTTA
    AGATGGAATGTGCAGCATGGTGTGGTTACAATCCCTAAATCGGTAACACCAAACAGAATC
    TCTGAAAACTTCCAAATATTTGATTTCGAATTATCAGATGAACAAATGACGCGGATCGAT
    GGTTTAAATCAAGATAAGAGAATTGGACCTGATCCAAAAAAATTTGAAGGCTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    834

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001775
  • symbol: JSNZ_001775
  • description: aldo/keto reductase
  • length: 277
  • theoretical pI: 4.86017
  • theoretical MW: 31452.4
  • GRAVY: -0.400361

⊟Function[edit | edit source]

  • TIGRFAM:
    voltage-dependent potassium channel beta subunit (TIGR01293; HMM-score: 45.1)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    TIM_barrel (CL0036) Aldo_ket_red; Aldo/keto reductase family (PF00248; HMM-score: 174)
    and 2 more
    HTH (CL0123) Myb_DNA-bind_6; Myb-like DNA-binding domain (PF13921; HMM-score: 13.6)
    Death (CL0041) Death; Death domain (PF00531; HMM-score: 12.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9948
    • Cytoplasmic Membrane Score: 0.0001
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.0048
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007312
    • TAT(Tat/SPI): 0.000213
    • LIPO(Sec/SPII): 0.000879
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MEVKTFYNGNTMPQIGLGTFRVENDENCMESVKYAIEQGYRSIDTAKVYGNEEQVGAGIRAGLESTGIAREDLFITSKLYFEDFGRENVAAAYEASLSRLGLKYLDLYLVHWPGTNEAVMVDTWKGMEDLYKNNKVKNIGVSNFEPEHLEALLAQVSIKPVINQVEYHPYLTQHKLKLYLAAQHIVMESWSPLMNAQILNDETIKDIAQELGKSPAQVVLRWNVQHGVVTIPKSVTPNRISENFQIFDFELSDEQMTRIDGLNQDKRIGPDPKKFEG

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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