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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001783
  • pan locus tag?: SAUPAN004511000
  • symbol: menE
  • pan gene symbol?: menE
  • synonym:
  • product: o-succinylbenzoate--CoA ligase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001783
  • symbol: menE
  • product: o-succinylbenzoate--CoA ligase
  • replicon: chromosome
  • strand: -
  • coordinates: 1835110..1836588
  • length: 1479
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    ATGGACTTTTGGTTATATAAACAAGCACAACAAAATGCACATCATATTGCGATAACAGAC
    GGTCAAGAATCTTATACTTATCAAAATTTATACTGTGAAGCGAGTCTATTGGCTAAAAGA
    CTCAAGGCTTATCAACAATCTCGTGTTGGGCTATACATAGATAATTCGATTCAATCGATC
    ATTTTAATACATGCATGTTGGTTGGCAAATATTGAAATTGCGATGATTAATACAAGGTTG
    ACACCTAATGAGATGACGAATCAGATGAAGTCAATCGATGTACAATTGATTTTTTGTACC
    TTGCCACTGGAATTGCGAGGGTTTCAAATTGTATCGCTGGATGATATTGAATTCGCTGGA
    ACGGATATTACAATGAACGGTTTGTTGGACAAGACAATGGATATCCAATATGATACATCG
    AATGAAACTGTGGTGCCGAAAGAGTCGCCGTCCAACATATTAAATACTTCATTTAATTTA
    GATGACATTGCATCGATTATGTTTACATCAGGGACAACTGGTCCTCAAAAAGCGGTGCCG
    CAAACGTTTCGCAATCATTATGCTAGTGCAATCGGTTGTAAAGAGAGTTTGGGATTTGAT
    CATGACACAATTTGGCTATCTGTCTTGCCGATTTATCATATTTCGGGTCTCAGTGTACTT
    TTAAGAGCTGTTATTGAAGGGTTTGCTGTGCGCATTGTTGATAAATTCAATGCCGAACAA
    ATTTTAACGATAATTAAAAATGAACGCATCACGCACATTTCGCTTGTGCCACAAACTTTA
    AATTGGCTTATGCAACAAGGTTTACATGAACCTTATGATTTACAAAAAATATTACTCGGC
    GGTGCTAAATTATCTGCCACTATGATAGAGACGGCATTACAATATAACCTGCCAATTTAT
    AATTCATTTGGTATGACTGAGACATGTTCACAATTTTTAACAGCAACACCGGAAATGTTG
    CATGCACGTCCTGACACTGTAGGGATGCCAAGTGCCAATGTTGATGTAAAAGTTAAAAAT
    CCTAATAAAGAAGGTCATGGAGAATTAATGATTAAAGGCGCCAATGTGATGAATGGATAT
    TTGTATCCAACAGATTTAACGGGTACGTTTGAAAATGGTTATTTTAATACGGGTGACATT
    GCTGAAATAGATTATGAAGGTTATGTCATGATTTATGACCGACGTAAAGATTTAATTATT
    AGTGGCGGTGAAAATATTTATCCATATCAAATTGAAACGGTAGCGAAGCAATTTCCAGGT
    ATCAGTGACGCAGTATGTGTAGGGCATCCTGATGATACTTGGGGCCAAGTGCCTAAATTA
    TATTTTGTCAGTGAAAGTGACATTTCAAAGGCACAATTGATTGCATATTTATCAAAACAT
    TTAGCGAAATATAAAGTACCGAAACACTTTGAAAAGGTTGATACTTTACCTTATACATCA
    ACGGGTAAATTACAGAGAAATAAGTTGTATAGAGGATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1479

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001783
  • symbol: MenE
  • description: o-succinylbenzoate--CoA ligase
  • length: 492
  • theoretical pI: 5.57671
  • theoretical MW: 55334.9
  • GRAVY: -0.15874

⊟Function[edit | edit source]

  • reaction:
    EC 6.2.1.26?  ExPASy
    o-succinylbenzoate--CoA ligase ATP + 2-succinylbenzoate + CoA = AMP + diphosphate + 2-succinylbenzoyl-CoA
  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Menaquinone and ubiquinone O-succinylbenzoate-CoA ligase (TIGR01923; EC 6.2.1.26; HMM-score: 650.3)
    and 11 more
    Metabolism Transport and binding proteins Cations and iron carrying compounds (2,3-dihydroxybenzoyl)adenylate synthase (TIGR02275; EC 2.7.7.58; HMM-score: 150.1)
    acyl-CoA ligase (AMP-forming), exosortase A-associated (TIGR03098; HMM-score: 149.3)
    dicarboxylate--CoA ligase PimA (TIGR03205; EC 6.2.1.23; HMM-score: 144.8)
    cyclohexanecarboxylate-CoA ligase (TIGR03208; EC 6.2.1.-; HMM-score: 144.7)
    amino acid adenylation domain (TIGR01733; HMM-score: 122.7)
    benzoate-CoA ligase family (TIGR02262; HMM-score: 89.3)
    acetate--CoA ligase (TIGR02188; EC 6.2.1.1; HMM-score: 79.2)
    Cell structure Cell envelope Biosynthesis and degradation of murein sacculus and peptidoglycan D-alanine--poly(phosphoribitol) ligase, subunit 1 (TIGR01734; EC 6.1.1.13; HMM-score: 58.3)
    propionate--CoA ligase (TIGR02316; EC 6.2.1.17; HMM-score: 31.6)
    4-coumarate--CoA ligase (TIGR02372; EC 6.2.1.12; HMM-score: 15.5)
    Metabolism Central intermediary metabolism Other acetoacetate-CoA ligase (TIGR01217; EC 6.2.1.16; HMM-score: 14.7)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    ANL (CL0378) AMP-binding; AMP-binding enzyme (PF00501; HMM-score: 240.3)
    and 2 more
    AMP-binding_C (CL0531) AMP-binding_C; AMP-binding enzyme C-terminal domain (PF13193; HMM-score: 53.7)
    no clan defined DUF4176; Domain of unknown function (DUF4176) (PF13780; HMM-score: 13)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.67
    • Cytoplasmic Membrane Score: 0.01
    • Cellwall Score: 0.15
    • Extracellular Score: 0.17
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9819
    • Cytoplasmic Membrane Score: 0.0138
    • Cell wall & surface Score: 0.0006
    • Extracellular Score: 0.0036
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.024122
    • TAT(Tat/SPI): 0.000292
    • LIPO(Sec/SPII): 0.003296
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MDFWLYKQAQQNAHHIAITDGQESYTYQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMKSIDVQLIFCTLPLELRGFQIVSLDDIEFAGTDITMNGLLDKTMDIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDHDTIWLSVLPIYHISGLSVLLRAVIEGFAVRIVDKFNAEQILTIIKNERITHISLVPQTLNWLMQQGLHEPYDLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKVKNPNKEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDYEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYRG

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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