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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_001797
- pan locus tag?: SAUPAN004618000
- symbol: JSNZ_001797
- pan gene symbol?: —
- synonym:
- product: DUF1433 domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_001797
- symbol: JSNZ_001797
- product: DUF1433 domain-containing protein
- replicon: chromosome
- strand: -
- coordinates: 1843843..1844286
- length: 444
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
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361
421ATGGAAAGAAAAAAAATAATATTTATAATTTCCTTAATTATAGCACTCTTAATAAGTACT
GGCTATTTAATCAATAAAAACAAAAAAGACCATTACATTGAAATACAAGAAAAGAGAATA
GATTTATATTTTAAATATAACCTTAATAATTATCATTCAATGAAAATTACTAGTTTTAAA
AAGACGCCTATGGGTGGCTATATTGTGGATGGATATGTTAATCACAACAAAAATTATGAT
TTTAAAGTTCTCATCTCTGCAACTGACAATCATCAATTTGAAGATAGCATAGGATACGAT
GATAAGACATTTGGTAAATTATTTAAAGAAAAAGACCATAAAAATGAATTAAAATCTACA
GACATTATAAAAAAAGAACACTTGGACAAAAGTGATTATGAAGCCGATCCACCGTTATTC
TTCTTTTCTGGGAGATTAGAGTGA60
120
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420
444
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_001797
- symbol: JSNZ_001797
- description: DUF1433 domain-containing protein
- length: 147
- theoretical pI: 9.07972
- theoretical MW: 17426.8
- GRAVY: -0.62449
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM: no clan defined DUF1433; Protein of unknown function (DUF1433) (PF07252; HMM-score: 73.6)and 2 moreSwrA; Swarming motility protein (PF17423; HMM-score: 17.4)DUF1310; Protein of unknown function (DUF1310) (PF07006; HMM-score: 17.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helix: 1
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0005
- Cytoplasmic Membrane Score: 0.6238
- Cell wall & surface Score: 0.0009
- Extracellular Score: 0.3748
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.240103
- TAT(Tat/SPI): 0.003611
- LIPO(Sec/SPII): 0.232265
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MERKKIIFIISLIIALLISTGYLINKNKKDHYIEIQEKRIDLYFKYNLNNYHSMKITSFKKTPMGGYIVDGYVNHNKNYDFKVLISATDNHQFEDSIGYDDKTFGKLFKEKDHKNELKSTDIIKKEHLDKSDYEADPPLFFFSGRLE
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_001796 < JSNZ_001797
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)